Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq2089 82.4 6e-11 seq1299 82.4 6e-11 >seq2089 Length=376597 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/233 (68%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || || || || || | || |||| |||||||| || ||||| || || || || ||| Sbjct 255377 TATCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCG 255436 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | || || ||||||||| || ||||||||| | || || ||||| || || Sbjct 255437 GACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGT 255496 Query 16826 GGCACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCT 16883 || | ||| || ||||| ||| ||||| || || | | | ||| || | || Sbjct 255497 GGAATGCCTTCCTTGTCTTGAATCTTTGCT--TTGACATTTTCGATAGTATCAGAAGCCT 255554 Query 16884 CCGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || ||| | || |||||||| || |||| || || ||||||||||||||| Sbjct 255555 CCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 >seq1299 Length=73203 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 16706 TACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCG 16765 || || || || || | || |||| ||||| || |||||||| || || || || || Sbjct 16552 TATCCACCACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCT 16493 Query 16766 GCCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACA 16825 | | || ||||||||||||| ||||||||| | || || ||||| || || Sbjct 16492 GATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGT 16433 Query 16826 GGCACGCCCTCTTTGTCGGCAATTTGCTGC-TTCACCTGGCCCACAGTGTCGCCGGGCTC 16884 || | ||| || ||||| ||||| ||| || || | | | ||| || | ||| Sbjct 16432 GGAATGCCTTCCTTGTCTTGAATTT-TTGCTTTGACGTTTTCGATAGTATCAGAAGCCTC 16374 Query 16885 CGTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 | ||| | || |||||||| || |||| || || ||||||||||||||| Sbjct 16373 CACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405039464254690