Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq9189 113 3e-20 seq1299 113 3e-20 seq659 113 3e-20 seq656 113 3e-20 seq653 113 3e-20 seq9448 109 4e-19 seq1699 107 1e-18 seq8951 104 2e-17 seq2073 104 2e-17 seq2089 102 5e-17 seq1991 98.7 7e-16 seq2221 95.1 8e-15 seq1503 95.1 8e-15 seq2591 93.3 3e-14 >seq9189 Length=1005 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 271 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 330 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 331 GGTCGTATTTAGCCTTA 347 >seq1299 Length=73203 Score = 113 bits (124), Expect = 3e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 38126 CTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185 |||||| |||||||| ||||| || || ||| |||| || ||||| || || ||||| Sbjct 16514 CTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAA 16455 Query 38186 TATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATT 38245 || || || || ||||| | || | |||||| ||||| ||||||| || || || Sbjct 16454 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTTTGCTTTGACGTT 16395 Query 38246 CTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || |||||| | || ||||| | ||| || |||||||||||||| || || || Sbjct 16394 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 16335 Query 38306 GAATATCTGCAT 38317 || |||||||| Sbjct 16334 AAAAATCTGCAT 16323 >seq659 Length=2254 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 2112 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 2053 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 2052 GGTCGTATTTAGCCTTA 2036 >seq656 Length=2908 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 809 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 868 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 869 GGTCGTATTTAGCCTTA 885 >seq653 Length=2347 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 2127 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 2068 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 2067 GGTCGTATTTAGCCTTA 2051 >seq9448 Length=1297 Score = 109 bits (120), Expect = 4e-19 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 13 CTCTCTCTTCAA-GTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 71 Query 20007 GGTAATATTTAGCCTTA 20023 ||| ||||||||||||| Sbjct 72 GGTCATATTTAGCCTTA 88 >seq1699 Length=2309 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||| Sbjct 1436 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGGACTTGTTTGCTATCGGTCTCAT 1377 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 1376 GGTCGTATTTAGCCTTA 1360 >seq8951 Length=1021 Score = 104 bits (114), Expect = 2e-17 Identities = 70/77 (91%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 972 CTCTCTCTTCAA-GTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 914 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 913 GGTCGTATTTAGCCTTA 897 >seq2073 Length=994159 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||| | Sbjct 34019 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTAATTGTTTGCTATCGCTCTTGT 33960 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 33959 AGTCATATTTAGCCTTA 33943 Score = 104 bits (114), Expect = 2e-17 Identities = 69/77 (90%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||| ||||| ||||||| ||| | Sbjct 432542 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTAATTGTTTGCTATCGCTCTTGT 432601 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 432602 AGTCATATTTAGCCTTA 432618 >seq2089 Length=376597 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| |||||||| ||||| ||||| || |||| || | || || || ||||| Sbjct 255416 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 255475 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | || | |||||| ||||| ||| ||| || ||||| Sbjct 255476 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTT 255535 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || |||||| | || ||||| | ||| || |||||||||||||| || || || Sbjct 255536 TCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACA 255595 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 255596 AAAATCTGCAT 255606 Score = 87.8 bits (96), Expect = 1e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||| || || || ||||| || ||||| || ||||| | |||| |||||||||||| Sbjct 256101 TAAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTG 256160 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || | ||||||||||| || || || || Sbjct 256161 AATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTT 256220 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| || || || |||||| Sbjct 256221 GCCCGTCAATGTTTTTACAAAAATTTGCATG 256251 >seq1991 Length=1961302 Score = 98.7 bits (108), Expect = 7e-16 Identities = 76/89 (85%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||| |||||||||||| |||||||||||||||| || |||||||| Sbjct 1272046 AAGCCC-TTCCCTTAGCTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGT 1271988 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| |||||| ||||||| || |||| Sbjct 1271987 TAATCCATTCATGTGCGTCACGAAATAGA 1271959 >seq2221 Length=5235760 Score = 95.1 bits (104), Expect = 8e-15 Identities = 70/82 (85%), Gaps = 5/82 (6%) Strand=Plus/Plus Query 25915 TGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATG 25969 ||||||||||||||||||||| ||||||||| || |||||||||||||| ||| || Sbjct 3224205 TGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCTG 3224264 Query 25970 CGCGTCACTAATTAGATGACGA 25991 | |||||| ||||| ||||||| Sbjct 3224265 CACGTCACGAATTAAATGACGA 3224286 >seq1503 Length=71563 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| ||||||| ||||| ||||||| | |||||||||||| Sbjct 5684 CTCTCTCTTCAAAGTTCTTTGCAACTTTTCCTCATGGTACTTATCTACTATCGGTCTCGT 5625 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 5624 GGTCGTATTTAGCCTTA 5608 >seq2591 Length=10997 Score = 93.3 bits (102), Expect = 3e-14 Identities = 60/66 (91%), Gaps = 5/66 (8%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 3145 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 3204 Query 25957 TAATCC 25962 |||||| Sbjct 3205 TAATCC 3210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334907068196561