Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2089 163 2e-35 seq1299 152 4e-32 >seq2089 Length=376597 Score = 163 bits (180), Expect = 2e-35 Identities = 166/214 (78%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || ||||||||||||||||| |||||| |||| ||| |||||||||| Sbjct 255613 CGGAGGAATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGA 255554 Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 | | ||||| |||||||| |||| ||||||| | ||| ||||| ||||| |||| Sbjct 255553 GGCTTCTGATACTATCGAAAATGTCA---AAGCAAAGATTCA-AGACAAGGAAGGCATTC 255498 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||| || || ||||| | || ||||| ||||| || | || || | |||||| || Sbjct 255497 CACCAGATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGT 255438 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 |||||| |||||||| || ||||| ||||| || Sbjct 255437 CCGATTATAATATTCAGAAGGAATCGACGCTGCA 255404 Score = 95.1 bits (104), Expect = 1e-14 Identities = 113/151 (75%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | ||| Sbjct 256250 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 256191 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| |||||||||||||| || || || || Sbjct 256190 GACACAATCGAAAATGTAAAGGCCAAGATTCAG-GACAAAGAAGGGATCCCTCCAGATCA 256132 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTA 25148 ||||| |||||||||| || || || ||| Sbjct 256131 GCAGCGCCTTATTTTTGCTGGTAAGCATTTA 256101 >seq1299 Length=73203 Score = 152 bits (168), Expect = 4e-32 Identities = 160/208 (77%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||||||||||||||| |||||| |||| ||| ||||||||||| | || Sbjct 16322 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 16381 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 ||| |||||||| |||| ||||||||| ||| ||||| ||||| |||||||| | Sbjct 16382 TGATACTATCGAAAACGTCA---AAGCAAAAATTCA-AGACAAGGAAGGCATTCCACCAG 16437 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||||| | || ||||| ||||| ||||| || || | ||| || | |||| Sbjct 16438 ATCAGCAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATT 16497 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 | |||||||| || || || || || || Sbjct 16498 ATAATATTCAGAAGGAGTCAACACTGCA 16525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433276080670265