Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2089 140 3e-28 seq1299 125 6e-24 seq2168 114 1e-20 seq2629 95.1 1e-14 >seq2089 Length=376597 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || |||||||| | || || |||||||| | | Sbjct 255606 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 255547 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||| |||||||||||||| || |||||||| ||||| Sbjct 255546 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 255487 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| ||||| | |||||||| || Sbjct 255486 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAAT 255427 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 255426 ATTCAGAAGGAATCGAC 255410 Score = 118 bits (130), Expect = 9e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||| |||||||| || || ||||| | || || |||||| ||||||||||||||| Sbjct 256926 TTGTAAACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGG 256867 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || || | || || | ||| |||||| |||||||||||||||||||| | Sbjct 256866 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGC 256807 Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || || ||||||||||| || Sbjct 256806 CAGACCAGCAGCGCCTTATATTTGCAGG 256779 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | ||||||||||| |||| | ||||||||| | | Sbjct 256596 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 256537 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || |||||| || ||||||||||| |||||||| || || Sbjct 256536 GACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 256477 Query 22339 CAACG 22343 || || Sbjct 256476 CAGCG 256472 >seq1299 Length=73203 Score = 125 bits (138), Expect = 6e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || |||||||| | || || |||||||| | | Sbjct 16323 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 16382 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || | ||||| |||||||||||||||||| || |||||||| ||||| Sbjct 16383 GATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAG 16442 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| || || ||||| || || | || ||||| || Sbjct 16443 CAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAAT 16502 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || || || || Sbjct 16503 ATTCAGAAGGAGTCAAC 16519 Score = 105 bits (116), Expect = 6e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||| |||||||| ||||| ||||| | || || |||||| ||||||||||||||| Sbjct 14986 TTGTAAACATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGG 15045 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || || | || || | ||| |||||| ||||||||||| ||||| || Sbjct 15046 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTG 15105 Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || || ||||| ||||| || Sbjct 15106 CAGACCAGCAGCGCCTTATTTTTGCAGG 15133 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | || |||||||| |||| | |||||||| || | Sbjct 15313 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAGACATCT 15372 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||||| || || | || |||||| || ||||||||||| |||||||| | ||| Sbjct 15373 GATACCGTCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGGCCAA 15432 Query 22339 CAACG 22343 || || Sbjct 15433 CAGCG 15437 >seq2168 Length=114285 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || || || || || ||||| || || ||| | || ||||| || ||| Sbjct 62397 GTCAAGATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAA 62456 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | |||||||| | || || | || ||||||||||| ||||||||||||||||| Sbjct 62457 TCGTCCGATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCT 62516 Query 22333 GATCAACAACGTCTTATATTTGCCGG 22358 ||||||||||| ||||| ||||| || Sbjct 62517 GATCAACAACGACTTATTTTTGCAGG 62542 >seq2629 Length=74368 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||||||||| ||||||||| | || ||||| || ||| || | Sbjct 47959 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA 48018 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || ||||| || || || || || ||||| Sbjct 48019 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 48078 Query 22339 CAACGTCTTATATTTGCCGG 22358 || || | || ||||| || Sbjct 48079 CAGCGGTTGATTTTTGCAGG 48098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419677710158515