Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1299 105 5e-18 seq2089 91.5 1e-13 >seq1299 Length=73203 Score = 105 bits (116), Expect = 5e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||| || || || |||||||||||| || ||||||| ||| || Sbjct 16540 AGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGA 16481 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||||||||||||| ||||| ||||| ||||||||||| || | || || Sbjct 16480 CCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCC 16421 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCATTCGACCGT 34088 |||| | | | ||||||||| | || | | |||||| || || ||||| || Sbjct 16420 TTGT-CTTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGT 16362 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| ||||| || || | || || ||||| || |||||| Sbjct 16361 TATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 >seq2089 Length=376597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || ||||| || ||||| ||||||||||| || ||||| | |||| || Sbjct 255389 AGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGA 255448 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| |||||||| ||||| ||||| ||||||||||| || | || || Sbjct 255449 CCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCC 255508 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACT---CACACTATCAGTAGATTCGCATTCGACC 34086 |||| | | | | ||||||| || | | | | |||||| || || ||||| Sbjct 255509 TTGT-CTTGAATCTTTGCTT--TGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGT 255565 Query 34087 GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||||| ||||| || || | || || ||||| || |||||| Sbjct 255566 GTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397014825844462