Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2168 100 7e-16 seq2629 84.2 5e-11 >seq2168 Length=114285 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| || || || || |||||| | ||| || || || ||||| || ||||| || Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 ||||| || || || | |||| ||||||||| || || || |||||||| || || | Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 62422 GTCTTCACGAATATCTGCAT 62403 >seq2629 Length=74368 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/143 (73%), Gaps = 6/143 (4%) Strand=Plus/Minus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||| ||||| ||| ||||| || |||||||| ||||| |||||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGA---TCTGGAGGTATGCCTTCTTTGTCCTGTATTTTC 48042 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| ||||| || || ||||| ||||| || || || Sbjct 48041 GCTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 47982 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||| || || ||||| Sbjct 47981 AAAGTTTTGACAAAAATTTGCAT 47959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179505811100418