Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2089 141 9e-29 seq1299 91.5 1e-13 seq2629 86.0 6e-12 >seq2089 Length=376597 Score = 141 bits (156), Expect = 9e-29 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||||||| || ||||| || ||||| | | ||||| |||| Sbjct 255394 AAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTC 255453 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | || || |||||||| || || ||||| ||||| || || Sbjct 255454 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 255513 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| || | |||||| || |||||||| | |||| || Sbjct 255514 TTG-AATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGG 255572 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || |||||||| ||||| ||||| |||||| Sbjct 255573 TTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| |||| || |||||||| || ||||| || |||||||| || || || Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||| ||| || || ||||||| || | |||||||| Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| ||||||||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 91.5 bits (100), Expect = 1e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | || || ||||||||||| || ||||| || || || ||||||| ||||||| Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTA-TTTTTGC 256837 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | ||| || || |||||||| | ||| | || || || |||| Sbjct 256838 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 256897 Query 64423 AGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 ||||| ||||| |||||||| || | || |||| Sbjct 256898 TGTTTTCACGAAGATTTGCATGTTTACAAGGATA 256931 >seq1299 Length=73203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || ||||||||||| | ||| || ||||| || |||||||| |||||| Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTAT-TTTTGC 15075 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | ||| || || |||||||| | ||| | || || || |||| Sbjct 15074 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 15015 Query 64423 AGTTTTTACGAAAATTTGCATTTT 64446 |||||||| || |||||||| || Sbjct 15014 TGTTTTTACAAAGATTTGCATGTT 14991 >seq2629 Length=74368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | ||||||||| || ||||| || |||||||| || |||||||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | |||||| || || || || | || | || || || || ||| Sbjct 48038 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 47979 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| || ||||||||||| Sbjct 47978 GTTTTGACAAAAATTTGCAT 47959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499583399899640