Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq1299 109 5e-19 seq2089 96.9 3e-15 seq2629 86.0 6e-12 >seq1299 Length=73203 Score = 109 bits (120), Expect = 5e-19 Identities = 146/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCG 138477 |||||||||| ||||| || || || | | || ||||| |||||| | ||| || || Sbjct 16518 TTGACTCCTTCTGAATATTATAATCTGATAAT-GTACGACCGTCCTCCAATTGCTTGCCC 16460 Query 138478 GAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 | | |||| || ||||| || || || || || ||||| ||||| ||| |||||| ||| Sbjct 16459 GCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCT-TGAATTTTTGCTTT 16401 Query 138538 AAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | | ||| | || || | | |||||| |||| || | |||||||| |||| ||| Sbjct 16400 GACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGT 16341 Query 138597 TTTTACAAAAATCTGCAT 138614 ||||||||||||||||| Sbjct 16340 CTTTACAAAAATCTGCAT 16323 Score = 91.5 bits (100), Expect = 1e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 138473 TACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTT 138532 |||| | | | || || ||||| ||||| | ||| |||||||| ||||| || ||||| Sbjct 15135 TACCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCT-TGTATTTTT 15077 Query 138533 GTTTTAAT-TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTC 138591 | ||||| | ||| | ||||| | | |||||| || | || | |||||| |||||| Sbjct 15076 GCTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTC 15017 Query 138592 AGAGTTTTTACAAAAATCTGCATG 138615 || ||||||||||| || |||||| Sbjct 15016 AGTGTTTTTACAAAGATTTGCATG 14993 >seq2089 Length=376597 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/195 (72%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| ||||| || || ||| || || || |||||| || || || || | | Sbjct 255413 GATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCA 255472 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || || ||||| ||||| ||| | |||| ||| | Sbjct 255473 AAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCT-TGAATCTTTGCTTTGAC 255531 Query 138541 -TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || || | | |||||| |||| || | |||||||| |||| ||| || Sbjct 255532 ATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTT 255591 Query 138600 TACAAAAATCTGCAT 138614 ||||||||||||||| Sbjct 255592 TACAAAAATCTGCAT 255606 >seq2629 Length=74368 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 138490 CGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACG 138549 ||||| || || |||||||| ||||||||||| ||||| ||||| | || | Sbjct 48083 CGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCTTTTACATTCTCAATT 48024 Query 138550 GTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATC 138609 || || | || || ||||| | ||| | |||||||||||| | |||||| |||||||| Sbjct 48023 GTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAAGTTTTGACAAAAATT 47964 Query 138610 TGCATGG 138616 ||||||| Sbjct 47963 TGCATGG 47957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496201415554320