Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2089 131 2e-25 seq1299 113 4e-20 >seq2089 Length=376597 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| || | ||| || || || |||||||| |||||| Sbjct 255379 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGA 255438 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || || |||||| |||||||||||| || || Sbjct 255439 CAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 255498 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| ||||||| | ||| | | ||| |||| | ||||| || || | | ||| | Sbjct 255499 AATGCCTTCCTTGT-CTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA 255557 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | ||||| || |||| ||| ||||||||||||||||| Sbjct 255558 CTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCAT 255606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| |||||| | Sbjct 256457 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 256516 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| |||||| | | || || ||||| | || | ||||| ||||| || Sbjct 256517 TTAACATTCTCGATGGTGTCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCGGTAAG 256575 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || ||||| Sbjct 256576 AGTTTTAACAAAGATTTGCAT 256596 Score = 86.0 bits (94), Expect = 6e-12 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 126968 TGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATT 127027 || || ||||| | || | ||||||||||| ||||| || || || |||||| || Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 127028 TTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCG 127087 || ||| | | ||||| ||||| | | ||| ||||| | ||| | ||| ||||| Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 127088 GTCAGAGTTTTTACAAAAATCTGCATG 127114 |||| |||||||||||||| |||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCATG 256251 >seq1299 Length=73203 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| || | || ||||| || |||||||| ||||| Sbjct 16550 TCCACCACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGA 16491 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| || || | || || || || |||||| |||||||||||| || || Sbjct 16490 TAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 16431 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| ||| ||| ||||| || | ||||| || || | | ||| | Sbjct 16430 AATGCCTTCCTTGTCT-TGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCA 16372 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | ||||| || |||| ||| ||||||||||||||||| Sbjct 16371 CTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCAT 16323 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| | ||||||||||| || | || || || |||||||||||| |||||| | Sbjct 15452 CCCGCGAAAATCAATCGCTGTTGGCCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 15393 Query 127034 TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGA 127093 || | | |||||||| || | |||| ||||| | || | ||||| || || ||| Sbjct 15392 TTAACATTCTCGACGGTATCAGATGTCTCCACTTCCAATGTGATTGTTTTACCAGTAAGA 15333 Query 127094 GTTTTTACAAAAATCTGCAT 127113 ||||| ||||| || ||||| Sbjct 15332 GTTTTAACAAAGATTTGCAT 15313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475442366895440