Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq2029 159 1e-33 seq1968 152 2e-31 seq1299 109 2e-18 seq2089 104 9e-17 seq2168 100 1e-15 seq2629 91.5 6e-13 seq2526 91.5 6e-13 >seq2029 Length=1413229 Score = 159 bits (176), Expect = 1e-33 Identities = 175/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || || |||||| |||| ||||| ||||| || |||||| | |||| Sbjct 334322 TACAAGGGAGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAA 334381 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || || ||| | | | ||| | || | ||||| || ||||| || Sbjct 334382 ATGAAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTC 334441 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 ||||| || || |||||| ||||||| ||||| ||||||||| | || ||||||||| Sbjct 334442 CCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGT 334501 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||||||| || ||||| || ||||| |||||||||||| | || ||||| Sbjct 334502 CTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 334554 Score = 84.2 bits (92), Expect = 9e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 || ||||| | |||||||| | || ||||||||||| |||| ||| | || |||||| Sbjct 330812 GGCAAGCCAAAAGTTCAAGTAGAATACAAAGGTGAAACGAAAATATTTACACCAGAAGAA 330871 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAAT 451298 ||||| || |||||| | ||||||||||| ||||| |||| || Sbjct 330872 ATTTCTTCCATGGTTTTGGGAAAAATGAAAGAGACAGCTGAACGAT 330917 >seq1968 Length=154426 Score = 152 bits (168), Expect = 2e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || || || || || |||||| | ||||||||| |||||||| || | ||| Sbjct 58536 AAAACCTTCGCACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCA 58595 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| | || ||| | ||||||| |||| || || ||||| || ||| Sbjct 58596 GAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAAT 58655 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| || | |||||| |||| Sbjct 58656 GATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTTCGT 58715 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || || |||||||||||||| || ||| | ||||||||| Sbjct 58716 ATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGA 58754 Score = 100 bits (110), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Plus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| |||||||| || | | || | ||| Sbjct 59817 AATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTAT------TTCG 59870 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | || |||| || || ||| | || | ||||| | ||| || | ||||| || Sbjct 59871 GGCGAAGAAAGTACTGGTGACATTGTATTGTTGGATGTGAATCCTTTAACCCTTGGTATT 59930 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 |||||| |||||| | ||||| || | ||| || |||| ||| ||||||| | Sbjct 59931 GAAACAATTGGTGGTGTTATGACCAAACTCATTCAA--AGGAACACTGTTATTCCTACCA 59988 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | |||||||| | || ||||||| ||||||||| ||| || |||||||| || Sbjct 59989 AGAAGAGTCAGATCTTCTCTACAGCAGCTGATAACCAGCCAACAGTCACTATTCAGGT 60046 Score = 87.8 bits (96), Expect = 7e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 || |||||||| |||| | ||| |||||| ||||| ||||| |||| | |||| Sbjct 60297 CCACAAATTGAGGTTACGTTTGAAATTGATGTGAATGGCATTCTACATGTCACAGCAGAG 60356 Query 452375 GAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434 || || ||||||| | | |||||||| || || || ||| | || || || || Sbjct 60357 GATAAGGGTACTGGAAACAAAAATAAAATTACGATCACAAACGATCATAATCGATTGTCA 60416 Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGA 452487 |||||||||||||| ||| || |||| ||||| |||||| ||||| || Sbjct 60417 CCAGAAGATATTGAAAGGATGATAAATGATGCAGAGAAATTCGCCGATGAAGA 60469 >seq1299 Length=73203 Score = 109 bits (120), Expect = 2e-18 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||| |||||||| || || || || || || | || Sbjct 16322 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 16381 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | ||| |||||||||||| |||||||| ||||| || ||||| Sbjct 16382 TGATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCA 16441 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || ||| | || || || | || || | |||||||| Sbjct 16442 GCAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAA 16501 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 |||| | ||||| ||||||| ||| Sbjct 16502 TATTCAGAAGGAGTCAACACTGCAC 16526 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || || || |||||||||||||| ||||| || |||||||| || || | || Sbjct 14994 ATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 15053 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| |||||| ||||| |||||||| || ||| | || || Sbjct 15054 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTGCAGACCAG 15113 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || | ||||| |||| Sbjct 15114 CAGCGCCTTATTTTTGCAGG 15133 >seq2089 Length=376597 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||| |||||||| || || || || || || | || Sbjct 255607 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 255548 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| ||| |||||||| |||||||| ||||| || ||||| Sbjct 255547 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 255488 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || || || || || || | || ||| | |||||||| Sbjct 255487 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 255428 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 |||| | ||||| | || || ||| Sbjct 255427 TATTCAGAAGGAATCGACGCTGCAC 255403 Score = 91.5 bits (100), Expect = 6e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||||||||| ||||| || |||||||| || || | || Sbjct 256918 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 256859 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| |||||| ||||| ||||| || ||||| || || || Sbjct 256858 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGACCAG 256799 Query 391170 CAACG 391174 || || Sbjct 256798 CAGCG 256794 >seq2168 Length=114285 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || | ||||| || || ||||| ||||| || ||||| || Sbjct 62403 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 62462 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||||||||| || ||||| ||||||||| Sbjct 62463 GATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 62522 Query 391170 CAACGTTTAATTTTCTCAGG 391189 ||||| | ||||| |||| Sbjct 62523 CAACGACTTATTTTTGCAGG 62542 >seq2629 Length=74368 Score = 91.5 bits (100), Expect = 6e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 47959 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA 48018 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| ||||| || || || ||||| || ||||| ||||| Sbjct 48019 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 48078 Query 391170 CAACGTTTAATTTTCTCAGG 391189 || || || ||||| |||| Sbjct 48079 CAGCGGTTGATTTTTGCAGG 48098 >seq2526 Length=10911 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 3511 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 3454 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 3453 GTCCCACAGAGGGC 3440 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 3511 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 3454 Query 511715 ATCCCACATAAGGC 511728 ||||||| | ||| Sbjct 3453 GTCCCACAGAGGGC 3440 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 3511 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 3454 Query 510801 ATCCCACATAAGGC 510814 ||||||| | ||| Sbjct 3453 GTCCCACAGAGGGC 3440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975469539127748