Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq2029 179 3e-39 seq1968 132 4e-25 seq2070 86.0 5e-11 >seq2029 Length=1413229 Score = 179 bits (198), Expect = 3e-39 Identities = 261/368 (71%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || || | |||||| |||| |||||| || |||||||| || ||||| | | |||| Sbjct 334566 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 334507 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 || |||||||||||| || | ||||||||||||||||| ||||||||| ||||| ||| Sbjct 334506 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTAT 334447 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGT 518344 || || || |||||||| ||||| | || | | ||| | | |||| ||||| | Sbjct 334446 GCGGGGACTGTAATAACAGCATCCTTGACCGCGTGACCCAGAAAAGCTTCCGCCGTCTCC 334387 Query 518345 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCATTT 518404 ||||||||| |||| ||| || ||||| | |||||| | | | ||| | || Sbjct 334386 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAAGTCTTCGTCTCTCCC 334327 Query 518405 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAG 518461 | ||| || | | | ||||| | |||| |||| | |||||||||||||| Sbjct 334326 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 334267 Query 518462 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 518521 | ||||||||| ||||| || | |||| ||| | | |||||| | |||||| || Sbjct 334266 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 334207 Query 518522 TCAAAAAT 518529 || |||| Sbjct 334206 TCTGAAAT 334199 Score = 113 bits (124), Expect = 3e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 |||| ||||||| ||||| |||||| |||||| |||||||||||| ||||| ||| || Sbjct 334047 AAAACAGTATTGTGCGGATTCATTGCAACTTGATTTTTGGCTGCATCGCCAATAAGACGT 333988 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 518629 || || || ||||||| |||||| ||||| ||||| ||||||||| Sbjct 333987 TCAGTATCGGTAAATGCAACATACGATGGTGTTGTACGATTACCT 333943 Score = 113 bits (124), Expect = 3e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 517174 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 517233 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 336099 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 336040 Query 517234 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 517293 |||| ||| |||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct 336039 TTGTTTGCCTGTGGATTTATCCTGGGCAGAAACATTCAGAATACCGTTGGCGTCAATATC 335980 Query 517294 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 517353 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 335979 AAACGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 335920 Query 517354 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 517403 | | || || ||||| |||||||| || |||||||| ||| ||| Sbjct 335919 TTTACCAAGCAAGTTATTGTCTTTAGTCAAAGCACGTTCACCTTCGTAAA 335870 >seq1968 Length=154426 Score = 132 bits (146), Expect = 4e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 518156 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 518215 ||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || || Sbjct 58774 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 58715 Query 518216 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 518275 | | |||||| || || ||||| | ||||||||||| || ||||| | ||||| ||| Sbjct 58714 CGAACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 58655 Query 518276 TTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTT 518335 ||||| || ||||| || |||| ||| |||| ||||||| || || | ||| || | Sbjct 58654 TTAAAGTAAGCAGGTACCGTAACAACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCT 58595 Query 518336 GCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 518373 || | | |||||||| | | || ||||| |||||| Sbjct 58594 GCGATCTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 58557 Score = 107 bits (118), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 518453 AATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 518512 || ||||| | ||| |||||| ||| ||| || || || | |||| ||||| | Sbjct 58388 AAAGGCCAATGTTTGATATCTTGTTGTACAGTTGAATCCTTGTACTCTCGGCCAATCAGA 58329 Query 518513 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCT 518572 ||||| ||||||||| |||||| ||||| ||| |||| |||||||||||| Sbjct 58328 CGTTTAACATCAAAAACAGTATTTTCCGGATTTGTTGTTAACTGATTTTTGGCTGCATCA 58269 Query 518573 CCAATCAGATGTT-----CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 518626 ||||| ||| | | || || | || |||| || ||||| ||||| | |||||| Sbjct 58268 CCAATAAGACGCTCACCGCTTTCACCAGTGAATGCTACGTATGACGGAGTGATCCGATTA 58209 Query 518627 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 518682 || || ||||| ||||||||||| ||| ||||||| | || || ||||| || Sbjct 58208 CCCTGTTCATTTGCAATAATTTCCACTCGTCCATTTTTATAGACTCCAACACAGCT 58153 >seq2070 Length=155798 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 200573 TTCATTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 200632 ||| |||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 108099 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 108040 Query 200633 TCCTAATGTTTTCTTGATCATGGCTGAACATTCAATATGCCAACCAGGTACACCAAA 200689 || | ||||| |||| |||||||| || ||||||||||||||| ||| || Sbjct 108039 ACCACAGATTTTCGAACTCATTGCTGAACACTCGATATGCCAACCAGGTCTACCTAA 107983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780334553396686