Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2029 147 3e-30 seq183 95.1 2e-14 >seq2029 Length=1413229 Score = 147 bits (162), Expect = 3e-30 Identities = 219/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | ||| || || ||||| || || |||||||| || |||||||| ||| Sbjct 334566 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 334507 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||||||| | | | |||||| || ||||||||||| ||||| |||||||| Sbjct 334506 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTAT 334447 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | || || ||| |||| | ||| ||| | | |||||| | || Sbjct 334446 GCGGGGACTGTAATAACAGCATCCTTGACCGCGTGACCCAGAAAAGCTTCCGCCGTCTCC 334387 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 |||||||| | ||||||||| ||||||||||| | | ||| ||||| || || Sbjct 334386 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAAGTCTTCGTCTCTCCC 334327 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || | ||||| | | | |||||| | || || | | || ||| | | |||| Sbjct 334326 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 334267 Query 7895 TCTTTCATATC 7905 | ||||||||| Sbjct 334266 TGTTTCATATC 334256 Score = 122 bits (134), Expect = 1e-22 Identities = 181/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 || || || || || |||||||||||||||| || ||| ||||||||| | | Sbjct 335409 TCGTCTGGATTGATGCTTTTATTCAGTTCTTTGCCAGAAAAGAAATCCGATAGGAGCTTC 335350 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | |||||| || || || |||||||| || | || || |||| |||| | || Sbjct 335349 TGCACTTTCGGAATACGGGTTGATCCACCTACTAGTACAATGTCATGGACTTGGGCCTTG 335290 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | || || |||| || || || || |||||| | |||||| | || Sbjct 335289 TCCATCTTAGCATCACGGAGTGCCTTCTCAACTGGATCCATAGTTGAACGGAAAAGATCA 335230 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| | ||||||||| || |||||||| || || |||||||||| || ||| | Sbjct 335229 GCACATAATTCCTCAAAGCGAGCACGGGTGATATTGGTGTAGAAATCAATTCCCTCGAAC 335170 Query 7298 AACGAATCAATTTCAAT 7314 || ||||||||||| || Sbjct 335169 AATGAATCAATTTCGAT 335153 Score = 93.3 bits (102), Expect = 5e-14 Identities = 185/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Minus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || | || || || || || || || |||||| || || || || || || Sbjct 336135 TTCATCATCTGCCTTGTATTTCTCAGCTTCCTGTACCATCCGCTCGATCTCATCCTTTGA 336076 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | || |||||||| ||||| ||||| || | ||| || | || ||||| | Sbjct 336075 CAAACGTCCTTTATCATTGGTAATGGTAATTTTGTTTTGTTTGCCTGTGGATTTATCCTG 336016 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| ||||||| |||||| || || |||| ||| ||| | || | |||||| || Sbjct 336015 GGCAGAAACATTCAGAATACCGTTGGCGTCAATATCAAACGTGACTTCAATTTGCGGCAC 335956 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||||| || | || || ||| ||||||| || | || || | Sbjct 335955 ACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAATTTACCAAGCAAGTTATTGTCTTT 335896 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841 | | |||||||||||| || || | |||| Sbjct 335895 AGTCAAAGCACGTTCACCTTCGTAAACCTGAATT 335862 >seq183 Length=47908 Score = 95.1 bits (104), Expect = 2e-14 Identities = 117/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | ||| || || |||||||| | |||||| |||||||| ||||| | || Sbjct 18475 TTTACCACGAAGAGGGAACACACCGTACTTATCACGTCCAACAACACCGAGACCTGAAAC 18534 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || | | ||| || ||||||||||| |||| |||||| ||||||| | || | | | Sbjct 18535 AGCCAACGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACACTGTGCCGAATTTTT 18594 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | || || || || |||||||| | |||| Sbjct 18595 CGTACCAGCATCGTTAGCGTCTTCCAGTTTTGGCACACCC 18634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635054750118040