Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2089 141 2e-28 seq1299 141 2e-28 seq2168 120 7e-22 seq2629 98.7 2e-15 >seq2089 Length=376597 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || || || || |||||||| ||||||| | || | || || || Sbjct 255397 AACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTC 255456 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 255457 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTG 255516 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||| || || || || || ||| |||||||| || || | || || Sbjct 255517 AATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 255576 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| ||||| || | |||||| Sbjct 255577 ACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || ||||| || || |||||||| ||||| || || |||||||| |||||| Sbjct 256777 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTG 256836 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| ||| ||||||||||| || | ||| ||||| |||| Sbjct 256837 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 256896 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 256897 GTGTTTTCACGAAGATTTGCAT 256918 Score = 111 bits (122), Expect = 3e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 194995 TGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATT 195054 |||||||| || || ||||| || || || |||||||| || ||||||||||| ||||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 195055 TTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 || ||| || || || || ||||| ||| || ||||| | ||| | |||||| || Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 195115 GTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| |||||||| || | |||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 >seq1299 Length=73203 Score = 141 bits (156), Expect = 2e-28 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || ||||| || |||||||| ||||| | | || | || || || Sbjct 16532 AACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTC 16473 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || ||||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 16472 CAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTG 16413 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||| |||||||| || || || || ||| |||||||| || || | || || Sbjct 16412 AATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 16353 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| ||||| || | |||||| Sbjct 16352 ACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 116 bits (128), Expect = 8e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || ||||| || || ||||||| ||| || ||||| |||||||| |||||| Sbjct 15135 TACCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTG 15076 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| ||| ||||||||||| || | ||| ||||| |||| Sbjct 15075 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 15016 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 |||||||| || | |||||| Sbjct 15015 GTGTTTTTACAAAGATTTGCAT 14994 >seq2168 Length=114285 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||| || |||||||||||||| || || ||||| || || || ||||||||||| Sbjct 62543 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 62484 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || ||||||||||| || || ||| || |||||||||| ||||||||| || || Sbjct 62483 CTTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 62424 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 62423 CGTCTTCACGAATATCTGCAT 62403 >seq2629 Length=74368 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || | || || || |||||||| |||||||||||||| || ||||| Sbjct 48100 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 48041 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || |||||||| || || || ||| || ||||| |||| ||| || || || | Sbjct 48040 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 47981 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||| || || | |||||| Sbjct 47980 AAGTTTTGACAAAAATTTGCAT 47959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109341850044377