Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq2089 113 3e-20 seq1299 104 2e-17 >seq2089 Length=376597 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | || ||| |||||||| ||||| || || | | || | || || Sbjct 255397 AACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTC 255456 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || ||||| ||||| ||| | || | || |||||||| Sbjct 255457 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTG 255516 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 |||||| |||||| | | || | ||| ||||| || |||| ||||||||||| Sbjct 255517 AATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 255576 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||| ||||| |||||||| Sbjct 255577 ACCCGTCAAAGTCTTTACAAAAATCTGCAT 255606 >seq1299 Length=73203 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||| ||| | ||| || |||||||| ||||| || || | | || | || || Sbjct 16532 AACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTC 16473 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| || ||||| ||||| ||| | || | || |||||||| Sbjct 16472 CAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTG 16413 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||| || ||||||| | | || | ||| ||||| || |||| ||||||||||| Sbjct 16412 AATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 16353 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||| ||||| |||||||| Sbjct 16352 ACCCGTCAAAGTCTTTACAAAAATCTGCAT 16323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324594703923768