Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq2029 158 1e-32 seq1968 140 3e-27 seq2629 95.1 1e-13 seq1299 86.0 5e-11 >seq2029 Length=1413229 Score = 158 bits (174), Expect = 1e-32 Identities = 162/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 550316 TTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCT 550375 ||| | |||||| | ||||| || |||||||| | |||||||| | || || ||| Sbjct 334343 TTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAAATGAAGGAGACGGCGGAAGCT 334402 Query 550376 TTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCA 550435 ||| | ||||| | || | |||||| || || || || || ||||| |||||||| ||| Sbjct 334403 TTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTCCCCGCATACTTTAATGATTCA 334462 Query 550436 CAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATC 550495 ||||| ||||| ||||||||| | || |||||||| || |||||||| ||||||||| Sbjct 334463 CAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGTCTAAATGTTCTACGTATTATC 334522 Query 550496 AATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| || || ||||| |||| ||||| Sbjct 334523 AACGAACCAACAGCAGCTGCTATTGCTTATGG 334554 Score = 100 bits (110), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 |||||| ||| ||||| ||| | || |||||||| ||||| ||||||| || Sbjct 335862 AATTCAGGTTTACGAAGGTGAACGTGCTTTGACTAAAGACAATAACTTGCTTGGTAAATT 335921 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | || || ||||| ||||||||||| || || |||||||||||||| || || || Sbjct 335922 CGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACGTTTGA 335981 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATC 552601 ||| || ||||| || ||| ||||||| |||| |||||||| Sbjct 335982 TATTGACGCCAACGGTATTCTGAATGTTTCTGCCCAGGATAAATC 336026 Score = 91.5 bits (100), Expect = 1e-12 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 552220 AGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAA 552279 |||| || || |||||||| ||| | || ||||||||||||||||| | | ||| Sbjct 335539 AGGCCGTGGCGTATGGTGCAGCAGTGCAGGCAGCTATTCTTTCTGGTGATAAGTCGGAAG 335598 Query 552280 AACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTG 552339 ||||| || | |||| | || || | || || || |||||| | ||||||| || Sbjct 335599 CCGTACAAGATTTGTTACTGCTTGACGTCGCACCGCTTTCACTTGGTATTGAAACAGCTG 335658 Query 552340 GAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCC 552382 | ||| |||||||| || ||| | |||||||| |||||||| Sbjct 335659 GGGGTGTTATGACTGCACTCATCAAGAGAAATACCACTATTCC 335701 Score = 87.8 bits (96), Expect = 1e-11 Identities = 101/135 (75%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 361699 TCCAAGACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAG 361758 ||||| ||||||||| | | ||| |||||||||||||| || || | |||||| || Sbjct 334560 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACATTTAG 334502 Query 361759 TCCCGCTATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGG 361818 || || ||| | |||| ||||||||| ||||||| ||||||||| ||||| || Sbjct 334501 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTATGCGGG 334442 Query 361819 AACAGTAATCACTGC 361833 || ||||| || || Sbjct 334441 GACTGTAATAACAGC 334427 >seq1968 Length=154426 Score = 140 bits (154), Expect = 3e-27 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 |||| || | |||||| | |||||| | |||||||| | | || || | | Sbjct 58546 CACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATC 58605 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || | ||||| | ||||||| | || ||||| || || |||||||| |||||| Sbjct 58606 TAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAAC 58665 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| |||||||| || |||||| || || |||||| ||||||| ||||||| Sbjct 58666 GTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTTCGTATCATCAATG 58725 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 ||||||| ||||| || ||||||||||| | ||||| Sbjct 58726 AACCTACAGCTGCCGCTATTGCATATGGATTGGATAA 58762 Score = 109 bits (120), Expect = 4e-18 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 550022 AGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAAC 550081 || |||||||| || | ||||||| ||| ||||||||||| ||||| || ||||| Sbjct 58153 AGCTGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAAT 58212 Query 550082 AGAACTACTCCATCTTATGTTTCTTTCACGG----AAAC--TGAACATTTAGTTGGTGAT 550135 | | ||||| || || || | ||||| | || | ||| | | | |||||||| Sbjct 58213 CGGATCACTCCGTCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGAT 58272 Query 550136 GCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTA 550195 ||||| ||| |||| || ||||| |||||| ||||||||| ||||||| | Sbjct 58273 GCAGCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTG 58332 Query 550196 ATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTC 550252 ||||| || | || ||||| ||||| || |||||| || |||||||||||| Sbjct 58333 ATTGGCCGAGAGTACAAGGATTCAACTGTACAACAAGATATCAAACATTGGCCTTTC 58389 Score = 89.7 bits (98), Expect = 4e-12 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 361721 GCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGCTATTTTTGATGCATCT 361780 |||||||| ||||| || || || || ||||||||| || || || | ||||||| Sbjct 58738 GCAGCTGTAGGTTCATTGATGATACGAACAACATTGAGGCCGGCAATAGTACCTGCATCT 58679 Query 361781 AAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGTAATCACTGCTTTTTCA 361840 || ||||||||||||||||||||||| || ||||| || |||| ||||| | || Sbjct 58678 TTGGTAGCTTGACGTTGTGCATCATTAAAGTAAGCAGGTACCGTAACAACTGCATGTTTT 58619 Query 361841 ACTT 361844 |||| Sbjct 58618 ACTT 58615 >seq2629 Length=74368 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || |||||||| | | |||||||| ||||| || |||||||| || || ||||| | Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| |||||||||||| | | || | | || || |||| ||||||||||| | Sbjct 48038 TTTACATTCTCAATTGTATCTGAG-GATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 47980 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||| || ||||||||||| Sbjct 47979 AGTTTTGACAAAAATTTGCAT 47959 >seq1299 Length=73203 Score = 86.0 bits (94), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 |||||| ||||| | || || | || || | ||| || || ||||| || |||| Sbjct 16505 AATATTATAATCTGATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCG 16446 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 |||||||| || ||||| ||||| || |||||||||||| ||| || || || || Sbjct 16445 CTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTTTGCTTTGACGTTTTCGATAGT 16386 Query 563412 ATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 ||||| | | || |||||| || | |||||||| || | ||| || || ||||| | Sbjct 16385 ATCAG-AAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCT 16327 Query 563471 GCAT 563474 |||| Sbjct 16326 GCAT 16323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028776092382190