Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2089 141 7e-29 seq1299 141 7e-29 seq2629 122 7e-23 seq2168 96.9 3e-15 >seq2089 Length=376597 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || ||||| || || ||||| ||||||| | || | | || |||| ||| Sbjct 255404 TGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGC 255463 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||||||||| || |||||||| ||| Sbjct 255464 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTT 255523 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||| ||||| | |||||||| || || | ||||| || || Sbjct 255524 GCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTC 255583 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| |||||||| |||||||| Sbjct 255584 AAAGTCTTTACAAAAATCTGCAT 255606 Score = 118 bits (130), Expect = 8e-22 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 ||||||||||||| | ||||| || || |||||||| || || || ||||| |||||| Sbjct 256777 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTG 256836 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | |||||||||||||||| |||||| || || | Sbjct 256837 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 256896 Query 101448 AAGTTTTTACAAATATCTGCATGGTTAC 101475 ||||| || || || |||||| |||| Sbjct 256897 GTGTTTTCACGAAGATTTGCATGTTTAC 256924 Score = 109 bits (120), Expect = 4e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || |||||||| ||||| || | ||||| ||||| || || || |||||||| || ||| Sbjct 256102 AAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGA 256161 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || |||||| |||| | |||||||| | || ||||| | |||| ||| ||| Sbjct 256162 ATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTG 256221 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || ||||||||||| || |||||| Sbjct 256222 CCCGTCAATGTTTTTACAAAAATTTGCATG 256251 >seq1299 Length=73203 Score = 141 bits (156), Expect = 7e-29 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || || || || || || || ||||| ||||| | | || | | || ||||||||| Sbjct 16525 TGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCCAATTGC 16466 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| ||||| ||||| || ||||||||||| || |||||||||||| Sbjct 16465 TTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTTT 16406 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| || |||| | ||| ||||| | |||||||| || || | ||||| || || Sbjct 16405 GCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTC 16346 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 ||||| |||||||| |||||||| Sbjct 16345 AAAGTCTTTACAAAAATCTGCAT 16323 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| || | ||||| || || | || || ||||| || ||||| |||||| Sbjct 15135 TACCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTG 15076 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | ||||| || | |||||||||||||||| |||||| || || | Sbjct 15075 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 15016 Query 101448 AAGTTTTTACAAATATCTGCATGGTTAC 101475 ||||||||||| || |||||| |||| Sbjct 15015 GTGTTTTTACAAAGATTTGCATGTTTAC 14988 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 101325 GCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTT 101384 |||| || ||||| || | |||||||||||| || || || ||||| ||||| |||| | Sbjct 15816 GCTTGCCAGCAAAAATAAGACGCTGTTGATCCGGAGGGATCCCTTCCTTATCCTGAACCT 15757 Query 101385 TTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGG 101444 | |||||| |||| | |||||||| || || ||||| | |||| ||| ||| | Sbjct 15756 TGGCCTTTACATTTTCGATTGTGTCAGAAGTCTCAACTTCTAAGGTGATCGTCATGCTCG 15697 Query 101445 TTAAAGTTTTTACAAATATCTGCA 101468 | || ||||||||||| || |||| Sbjct 15696 TCAATGTTTTTACAAAAATTTGCA 15673 >seq2629 Length=74368 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||||||||| ||||| ||||| ||||| || || ||||||||||| || || ||||| Sbjct 48100 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 48041 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||||||| | || | || || || | ||| || ||||| || | |||||| || |||| Sbjct 48040 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 47981 Query 101448 AAGTTTTTACAAATATCTGCATGGT 101472 ||||||| ||||| || |||||||| Sbjct 47980 AAGTTTTGACAAAAATTTGCATGGT 47956 >seq2168 Length=114285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 101329 ACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTG 101388 ||||||||| || | || |||||||| || ||||| || || |||||||||||||| Sbjct 62543 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 62484 Query 101389 TTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAA 101448 || ||| | || | || || |||| ||| || ||||| || | ||| || || ||||| Sbjct 62483 CTTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 62424 Query 101449 AGTTTTTACAAATATCTGCAT 101469 || || || ||||||||||| Sbjct 62423 CGTCTTCACGAATATCTGCAT 62403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396230919779667