Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq2089 143 2e-29 seq1299 140 2e-28 >seq2089 Length=376597 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| || ||||| || || |||||||| ||||| || | | ||| |||| ||| Sbjct 255398 ACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCC 255457 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || ||||| ||||||||||| ||||| | |||| ||| |||||||| | Sbjct 255458 AGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGA 255517 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| ||| ||| | | || || || |||||||| || | || || ||||| Sbjct 255518 ATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTA 255577 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||| ||||||||||||||||| Sbjct 255578 CCCGTCAAAGTCTTTACAAAAATCTGCAT 255606 >seq1299 Length=73203 Score = 140 bits (154), Expect = 2e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || |||||||| ||||| |||| | ||| |||| ||||| ||||| || ||||| Sbjct 16514 CTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAA 16455 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||||||||| ||||| | |||| ||| |||||||| ||| ||| ||| || Sbjct 16454 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTTTGCTTTGACGTT 16395 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || || |||||||| || | || || ||||| ||||||||||| ||||| Sbjct 16394 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 16335 Query 48755 AAAAATCTGCAT 48766 |||||||||||| Sbjct 16334 AAAAATCTGCAT 16323 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380891957842413