Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq2029 224 6e-53 seq1968 158 8e-33 seq2089 111 1e-18 seq1299 111 1e-18 >seq2029 Length=1413229 Score = 224 bits (248), Expect = 6e-53 Identities = 277/373 (74%), Gaps = 13/373 (3%) Strand=Plus/Plus Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 |||| || |||||| || ||||||||||||| ||||||||| | || ||||| ||| Sbjct 334199 ATTTCAGACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGAT 334258 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGT---AAACCATATATAGAAGC- 474627 ||| |||||||| ||||| || | |||| ||||||| ||||| || | | || Sbjct 334259 ATGAAACATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACC-TAAAGTGCAGGT 334317 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 |||||| | || || || || ||| | || ||| | ||||| || |||||||| Sbjct 334318 TGAATACAAG--GGAGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTG 334375 Query 474686 GCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAA 474743 | |||||||| | || ||| |||| | ||| || || | || | ||||| || | Sbjct 334376 GTTAAAATGAAGGAGACGGCGGAAGCT--TTTCTGGGTCACGCGGTCAAGGATGCTGTTA 334433 Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||| || || ||||| ||||||||||| ||||| ||||| ||||||||| | || || Sbjct 334434 TTACAGTCCCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGATTCCGGTGCAA 334493 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 |||| ||||| |||||| |||||||||| || |||||||||||||| || ||||||||| Sbjct 334494 TTGCTGGTCTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATG 334553 Query 474864 GTCTTGATAAGAA 474876 || | || ||||| Sbjct 334554 GTTTGGACAAGAA 334566 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Minus Query 290821 TCCAAGACCATATGTTAATGAAGCTGCTGTTGGTTCATTTATAATTCTTAATACATCAAG 290880 ||||| |||||| | | | ||||||||||||||| || ||||| | || |||| || Sbjct 334560 TCCAA-ACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACATTTAG 334502 Query 290881 ACCTGCAATTTTTGCCGAATCTAAAGTTGCCTGGCGTTGCGCATCATTAAAATAAGCAGG 290940 ||| |||||| | |||||| ||| || || ||||| | ||||||||| || || || Sbjct 334501 ACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTATGCGGG 334442 Query 290941 GACTGTAATAACAGC 290955 ||||||||||||||| Sbjct 334441 GACTGTAATAACAGC 334427 Score = 95.1 bits (104), Expect = 8e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 474412 AGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAACTGAACATCTTATTGGAGA 474471 ||||||| | ||||||||||| |||||| | ||||| || ||||||| ||||||||| || Sbjct 333943 AGGTAATCGTACAACACCATCGTATGTTGCATTTACCGATACTGAACGTCTTATTGGCGA 334002 Query 474472 TGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTATTTT 474516 ||| || ||| |||||| |||| ||||| |||||| |||| Sbjct 334003 TGCAGCCAAAAATCAAGTTGCAATGAATCCGCACAATACTGTTTT 334047 Score = 95.1 bits (104), Expect = 8e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||||||| | || |||||||| |||||| ||||| | || | | || Sbjct 335875 GAAGGTGAACGTGCTTTGACTAAAGACAATAACTTGCTTGGTAAATTCGAGTTGTCTGGA 335934 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 ||||| |||||||| | || || || ||||||||||| || ||||||||||| || || Sbjct 335935 ATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCACGTTTGATATTGACGCCAAC 335994 Query 476153 GGTATTCTTAATGTTACTGCTTGTGATAAATC 476184 |||||||| |||||| |||| |||||||| Sbjct 335995 GGTATTCTGAATGTTTCTGCCCAGGATAAATC 336026 >seq1968 Length=154426 Score = 158 bits (174), Expect = 8e-33 Identities = 167/220 (76%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 474657 CACCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATC 474716 ||||||| | ||||| |||||||| | | ||||||||| | | ||| |||||| Sbjct 58546 CACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATC 58605 Query 474717 TTGGACAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 | ||| | ||||||| ||||||| |||| || || || || ||||||||| | |||| Sbjct 58606 TAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAAC 58665 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 ||||||| || |||||||| || | ||||| || || |||||| | ||||| || |||| Sbjct 58666 GTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTTCGTATCATCAATG 58725 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGAA 474876 |||| ||||| ||||| |||| ||||| | |||||||| Sbjct 58726 AACCTACAGCTGCCGCTATTGCATATGGATTGGATAAGAA 58765 Score = 95.1 bits (104), Expect = 8e-14 Identities = 152/217 (70%), Gaps = 6/217 (3%) Strand=Plus/Plus Query 474378 AAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATG 474437 ||||||| ||| ||||| ||||| ||||| || |||||| | | || || ||||| | Sbjct 58172 AAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGGATCACTCCGTCATACG 58231 Query 474438 TTTCTTTTACTG----AAAC--TGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG 474491 | | || |||| || | ||| | ||||||||| ||||| || ||| |||| Sbjct 58232 TAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCAGCCAAAAATCAGTTAA 58291 Query 474492 CATCTAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATG 474551 || | ||||| | |||||| ||||||||| |||| | ||||||| || | | | | Sbjct 58292 CAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATTGGCCGAGAGTACAAGG 58351 Query 474552 ATACCACTGTCCAATCTGATATGCGTCATTGGCCTTT 474588 || | ||||| ||| ||||| ||||||||||| Sbjct 58352 ATTCAACTGTACAACAAGATATCAAACATTGGCCTTT 58388 >seq2089 Length=376597 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| || || || || || || || ||| || || ||||||||| | | || Sbjct 255385 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 255444 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || || ||||| || ||||| || || || || ||||| || ||||| || Sbjct 255445 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 255504 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||||| ||||||| ||| |||||||||| | | | ||| | Sbjct 255505 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA-CTTCGA 255563 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| || | |||||| || ||||| || Sbjct 255564 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 255603 >seq1299 Length=73203 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || || || ||||| || || || ||||||||| | || || Sbjct 16544 ACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGT 16485 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | || || | |||||| || ||||| || || || || ||||| || ||||| || Sbjct 16484 ACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 16425 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||| ||| |||||| ||| |||||||||| | | | ||| | Sbjct 16424 TTCCTTGTCTTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCA-CTTCGA 16366 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || |||||||| || | |||||| || ||||| || Sbjct 16365 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 16326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267757500709988