Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2029 212 8e-50 seq2089 167 3e-36 seq1299 167 3e-36 seq2168 123 3e-23 seq1968 122 1e-22 >seq2029 Length=1413229 Score = 212 bits (234), Expect = 8e-50 Identities = 264/362 (73%), Gaps = 0/362 (0%) Strand=Plus/Plus Query 195488 GACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAG 195547 ||||| || || || |||||||| |||||| ||| ||| ||| ||||| || Sbjct 334205 GACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGATATGAAA 334264 Query 195548 GACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTT 195607 | ||| | | | |||| || | || | || ||| |||| | | ||||||| Sbjct 334265 CATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCTAAAGTGCAGGTTGAATAC 334324 Query 195608 CACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATG 195667 | || |||| ||| ||| |||| ||||| |||||||| ||||| ||| |||| ||| Sbjct 334325 AAGGGAGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAAATG 334384 Query 195668 AAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCT 195727 |||||||| |||||| |||| ||||| | | || || ||||| ||| | || || || Sbjct 334385 AAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTCCCC 334444 Query 195728 GCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTA 195787 || ||||| | ||||||||||||||| || || || || | | ||| ||||| |||||| Sbjct 334445 GCATACTTTAATGATTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGTCTA 334504 Query 195788 AACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAG 195847 || ||| | |||||||| ||||||||||| ||||| |||||||||||| |||||||| Sbjct 334505 AATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGGTTTGGACAAG 334564 Query 195848 AA 195849 || Sbjct 334565 AA 334566 Score = 125 bits (138), Expect = 9e-24 Identities = 190/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 196133 GAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTT 196192 || |||||||| ||||| || |||||||| ||||| || | ||| |||||||| || ||| Sbjct 335156 GAAATTGATTCATTGTTCGAGGGAATTGATTTCTACACCAATATCACCCGTGCTCGCTTT 335215 Query 196193 GAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGT 196252 || || ||| ||||| | || | |||||| || ||||| | | ||| ||| Sbjct 335216 GAGGAATTATGTGCTGATCTTTTCCGTTCAACTATGGATCCAGTTGAGAAGGCACTCCGT 335275 Query 196253 GACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGT 196312 || || |||||||| ||| | | || |||| ||||| || || || |||||||||||| Sbjct 335276 GATGCTAAGATGGACAAGGCCCAAGTCCATGACATTGTACTAGTAGGTGGATCAACCCGT 335335 Query 196313 ATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACG 196372 |||||||| | || || | || || ||||| | ||||| | || |||| Sbjct 335336 ATTCCGAAAGTGCAGAAGCTCCTATCGGATTTCTTTTCTGGCAAAGAACTGAATAAAAGC 335395 Query 196373 ATCAACCCGGATGAAG-CAGTTGCTTAT 196399 ||||| || || |||| ||||| |||| Sbjct 335396 ATCAATCCAGACGAAGTGAGTTG-TTAT 335422 Score = 107 bits (118), Expect = 3e-18 Identities = 85/102 (83%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 ||||||||||| ||||||||||| |||||||| || |||| | ||||| | |||||| Sbjct 334669 ATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATGGTATT 334728 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGT 195976 |||||||| ||| |||| ||||| ||||||||||| || ||| Sbjct 334729 TTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGGT 334770 Score = 104 bits (114), Expect = 3e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 196384 TGAAG-CAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATA 196442 ||||| | || || |||||||| || || ||||| |||||||| || |||| | | Sbjct 335536 TGAAGGCCGTGGCGTATGGTGCAGCAGTGCAGGCAGCTATTCTTTCTGGTGATAAGTCGG 335595 Query 196443 ATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAG 196502 | ||| |||||| | | || ||||| || ||||| | || || ||| ||||||||| Sbjct 335596 AAGCCGTACAAGATTTGTTACTGCTTGACGTCGCACCGCTTTCACTTGGTATTGAAACAG 335655 Query 196503 CGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAAC 196562 | || |||||||||||| | | || | || || || |||||||| || || | | Sbjct 335656 CTGGGGGTGTTATGACTGCACTCATCAAGAGAAATACCACTATTCCCACGAAAACCTCCC 335715 Query 196563 AAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGT 196611 || || | || || ||||| || ||||| ||||| | |||||| || Sbjct 335716 AAACTTTCACCACATACTCCGACAACCAACCTGGTGTCCTTATTCAGGT 335764 Score = 91.5 bits (100), Expect = 2e-13 Identities = 189/279 (68%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 196598 GTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAAGGATAACCATCTACTTGG 196656 ||| | ||||| || || ||||| ||||| | | || | || || || | | ||||| Sbjct 335857 GTTGAAATTCAGGTTTACGAAGGTGAACG-TGCTTTGACTAAAGACAATAACTTGCTTGG 335915 Query 196657 AACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTG 196716 | ||||| ||| | || ||||| |||| || | ||||| || || ||| | || Sbjct 335916 TAAATTCGAGTTGTCTGGAATTCCGCCTGCTCCTCGCGGTGTGCCGCAAATTGAAGTCAC 335975 Query 196717 CTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAA 196776 || ||||| ||||| || || ||||| || || | || |||| || | | ||||| Sbjct 335976 GTTTGATATTGACGCCAACGGTATTCTGAATGTTTCTGCCCAGGATAAATCCACAGGCAA 336035 Query 196777 ATCTGAAAAGATTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACG 196836 | | || ||| ||||||||||| || || || | || ||||| || || || || Sbjct 336036 ACAAAACAAAATTACCATTACCAATGATAAAGGACGTTTGTCAAAGGATGAGATCGAGCG 336095 Query 196837 TATGGTTCAAGATGCGGAAAAGTACAGGGAAGAAGACGA 196875 ||||| || || || || || |||| || ||| || || Sbjct 336096 GATGGTACAGGAAGCTGAGAAATACAAGGCAGATGATGA 336134 >seq2089 Length=376597 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || | || || ||||| || || ||||| || ||| | || Sbjct 255606 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 255547 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| || ||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 255546 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 255487 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||| || || ||||| || || || || || | | ||||| || Sbjct 255486 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAAT 255427 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| ||||| || || || ||||| ||||| | ||||| ||||| Sbjct 255426 ATTCAGAAGGAATCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 255380 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| |||||||| || ||||||||||| ||||| || || || ||| | ||| Sbjct 256918 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 256859 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | ||||| || || ||||| ||||| || ||||| || || ||| Sbjct 256858 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGACCAG 256799 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||| ||||| |||| Sbjct 256798 CAGCGCCTTATATTTGCAGGTA 256777 Score = 129 bits (142), Expect = 8e-25 Identities = 116/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| ||||| | || || || || |||||| | || |||||| | || Sbjct 256250 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 256191 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||||||||| || | || ||||||||||| || || ||||| || || || |||||| Sbjct 256190 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCAG 256131 Query 171982 CAACGACTTATTTTTGCTGGTAAACA 172007 || || ||||||||||||||||| || Sbjct 256130 CAGCGCCTTATTTTTGCTGGTAAGCA 256105 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| ||||| ||||| || ||||| ||||| | || || || Sbjct 256601 GTGGTATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAG 256542 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || ||||| ||||| || | || || || || || || ||||| || |||||||| | Sbjct 256541 CATCTGACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAG 256482 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 | ||||| ||| | || || || |||| Sbjct 256481 ACCAGCAGCGATTGATCTTCGCGGGTA 256455 >seq1299 Length=73203 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||| || || | || || ||||| || || ||||| || ||| | || Sbjct 16323 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 16382 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || ||||| ||| ||||||| || |||||||| ||||||||||||||||| |||||| Sbjct 16383 GATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAG 16442 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || ||||| || || || | || || || ||||| | | ||||| || Sbjct 16443 CAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAAT 16502 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 |||| |||||||| || || ||||| ||||| | ||||| ||||| Sbjct 16503 ATTCAGAAGGAGTCAACACTGCACCTGGTTCTCCGCCTTCGTGGTGG 16549 Score = 131 bits (144), Expect = 2e-25 Identities = 114/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||||||||| ||||| || ||||||||||| ||||| || || || ||| | ||| Sbjct 14994 ATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 15053 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | ||||| || || ||||| |||||||| || || | || ||| Sbjct 15054 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTGCAGACCAG 15113 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || ||||||||||| |||| Sbjct 15114 CAGCGCCTTATTTTTGCAGGTA 15135 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171863 TGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAG 171922 ||||||| ||||| ||||| | || | | || |||||| | || |||||| | || | Sbjct 15673 TGCAAATTTTTGTAAAAACATTGACGAGCATGACGATCACCTTAGAAGTTGAGACTTCTG 15732 Query 171923 ACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGC 171982 |||||||||| || | || |||||| |||| ||||||||||| || || || ||||| | Sbjct 15733 ACACAATCGAAAATGTAAAGGCCAAGGTTCAGGATAAGGAAGGGATCCCTCCGGATCAAC 15792 Query 171983 AACGACTTATTTTTGCTGGTAA 172004 | || |||||||||||||| || Sbjct 15793 AGCGTCTTATTTTTGCTGGCAA 15814 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||||||||| ||||| |||||||| ||||| ||||| | || || ||| Sbjct 15308 GTGGTATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAGA 15367 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || || || |||| || | || || || || || || ||||| || |||||||| | Sbjct 15368 CATCTGATACCGTCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAG 15427 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 || || ||| | ||||| || |||| Sbjct 15428 GCCAACAGCGATTGATTTTCGCGGGTA 15454 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 171989 TTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAA 172048 || |||||| |||||||| | |||||||| |||||| | ||||||| || |||||| Sbjct 15571 TTTTTTTTGTAGGTAAACAATTGGAAGATGGTCGTACCTTGTCTGATTATAATATTCAAA 15630 Query 172049 AGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG--TGCAA 172093 |||||||||| || |||||||| || | || || ||||| ||||| Sbjct 15631 AGGAGTCTACACTCCACCTTGTACTTCGCCTCCGAGGTGGCTTGCAA 15677 >seq2168 Length=114285 Score = 123 bits (136), Expect = 3e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || ||||| || | |||||||| || || ||||| ||||| || ||||| Sbjct 62403 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 62462 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | || || || |||||||||||||| || |||||||| ||||| Sbjct 62463 GATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 62522 Query 171982 CAACGACTTATTTTTGCTGGT 172002 ||||||||||||||||| ||| Sbjct 62523 CAACGACTTATTTTTGCAGGT 62543 >seq1968 Length=154426 Score = 122 bits (134), Expect = 1e-22 Identities = 168/234 (72%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 195616 GAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGAC 195675 ||| |||| || || || || || ||||| | ||||| | || |||||||||| Sbjct 58533 GAAAAAACC-TTCGCACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGAT 58591 Query 195676 TGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTT 195735 || ||| | | | || || || ||| |||||||||| || |||||||||||||| Sbjct 58592 CGCAGAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTT 58651 Query 195736 CAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGTCT 195795 | |||| ||||||| || || || || || || | | ||||||| || || || | | Sbjct 58652 TAATGATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGT 58711 Query 195796 TAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 | | || ||||||||||| ||||| || || ||||| ||||| |||| ||||| Sbjct 58712 TCGTATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGATTGGATAAGAA 58765 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 195878 TTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTC 195937 || ||||| ||||||||||| |||||||| || | | | ||||| |||| | ||| Sbjct 59073 TTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACAATTGATAATGGTGTTTTC 59132 Query 195938 GAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 |||||| ||||||| ||||||||||||| | |||||||||||||| || Sbjct 59133 GAAGTATTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTTGA 59182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657781556934320