Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq1299 109 1e-18 seq2089 104 4e-17 seq2168 91.5 3e-13 >seq1299 Length=73203 Score = 109 bits (120), Expect = 1e-18 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | | ||| || || | ||| || ||||| || ||||||||||| | | Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| ||||| ||||| || ||||| || || || Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||||||||| |||||||| || Sbjct 15013 GTTTTTACAAAGATTTGCATGTT 14991 Score = 89.7 bits (98), Expect = 9e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || |||||||| | | ||||||||| ||||| || ||||| ||||| || | ||| Sbjct 15814 TTGCCAGCAAAAATAAGACGCTGTTGATCCGGAGGGATCCCTTCCTTATCCTGAACCTTG 15755 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 | |||| |||| || || || |||| ||||||||||| || || || | | || Sbjct 15754 GCCTTTACATTTTCGATTGTGTCAGAAGTCTCAACTTCTAAGGTGATCGTCATGCTCGTC 15695 Query 193338 AGCGTTTTTACAAATATTTGCA 193359 | ||||||||||| ||||||| Sbjct 15694 AATGTTTTTACAAAAATTTGCA 15673 >seq2089 Length=376597 Score = 104 bits (114), Expect = 4e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 ||| || || || |||||||| | | ||| ||||| ||||| || |||||||| || || Sbjct 256101 TAAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTG 256160 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 || |||| |||| |||| || || || |||| ||||||||||| || || || || Sbjct 256161 AATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTT 256220 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||||||||| |||||||| Sbjct 256221 GCCCGTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || | | ||| || || || || || || || || ||||||||||| | | Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCT 256838 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | |||| ||| || || |||| ||| ||||| ||||| || ||||| || || || Sbjct 256839 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 256898 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 ||||| || || |||||||| || Sbjct 256899 GTTTTCACGAAGATTTGCATGTT 256921 >seq2168 Length=114285 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || |||||||| | || ||||||||||| || || || || |||||||| ||||| | Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| ||| |||||||| || || || || || || || || || || |||| | Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 193341 GTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || Sbjct 62422 GTCTTCACGAATATCTGCATCTT 62400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899543843719920