Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq1299 125 1e-23 seq2629 116 7e-21 seq2168 116 7e-21 seq2089 107 3e-18 >seq1299 Length=73203 Score = 125 bits (138), Expect = 1e-23 Identities = 138/184 (75%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||||||||| | || |||| |||||||| || || ||||| || | || Sbjct 16505 AATATTATAATCTGATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCG 16446 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || ||||| || ||||| ||||| ||| || || ||||| Sbjct 16445 CTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTTTGCTTTGACGTTTTCGATAGT 16386 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| || || ||||||||||| || || || || | || ||||| Sbjct 16385 ATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 16326 Query 172067 CAtt 172070 |||| Sbjct 16325 CATT 16322 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| | | ||| ||||| | || || ||||| || ||||||||||| Sbjct 15135 TACCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTG 15076 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | || ||||| ||||| || ||||| ||||| | Sbjct 15075 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 15016 Query 172048 ATGTTTTAATGAATATCTGCAtttt 172072 |||||| | || || ||||| || Sbjct 15015 GTGTTTTTACAAAGATTTGCATGTT 14991 >seq2629 Length=74368 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| |||||||| || | ||| || || || ||||| |||||||| || |||||||| Sbjct 48100 TACCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCG 48041 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||||||||| || |||||||| ||||| || || || ||||| ||||||||||||| Sbjct 48040 CTTTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 47981 Query 172048 ATGTTTTAATGAATATCTGCAt 172069 | ||||| | || || ||||| Sbjct 47980 AAGTTTTGACAAAAATTTGCAT 47959 >seq2168 Length=114285 Score = 116 bits (128), Expect = 7e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171929 ACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATT 171988 ||| |||||||| | || ||||| |||||||| || || || |||||||| |||||| Sbjct 62543 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 62484 Query 171989 TTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAA 172048 || ||||| || ||||| ||||||||||| || || ||||| || || |||||||| Sbjct 62483 CTTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 62424 Query 172049 TGTTTTAATGAATATCTGCAtttt 172072 || || | |||||||||||| || Sbjct 62423 CGTCTTCACGAATATCTGCATCTT 62400 >seq2089 Length=376597 Score = 107 bits (118), Expect = 3e-18 Identities = 134/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| || || | || |||| |||| || || || ||||| || | || Sbjct 255424 AATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCG 255483 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| || || ||||| || ||||| || ||||| || || ||| ||||| ||||| Sbjct 255484 CTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGT 255543 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || | || ||||| || || ||||||||||| || || || || | || ||||| Sbjct 255544 ATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTG 255603 Query 172067 CAtt 172070 |||| Sbjct 255604 CATT 255607 Score = 86.0 bits (94), Expect = 1e-11 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 171928 TACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTAT 171987 |||| ||||| || | | ||| ||||| || || || || || || ||||||||||| Sbjct 256777 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTG 256836 Query 171988 TTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTA 172047 ||| ||||| || || ||||| | || ||||| ||||| || ||||| ||||| | Sbjct 256837 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 256896 Query 172048 ATGTTTTAATGAATATCTGCAtttt 172072 |||||| | ||| || ||||| || Sbjct 256897 GTGTTTTCACGAAGATTTGCATGTT 256921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905024770099800