Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2089 140 3e-28 seq1299 122 8e-23 seq2629 105 6e-18 >seq2089 Length=376597 Score = 140 bits (154), Expect = 3e-28 Identities = 160/212 (75%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || |||||||| || || | Sbjct 255606 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 255547 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| |||||| |||||||| ||||| || || || ||||| Sbjct 255546 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 255487 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGA--TTCGAGAAACA-TGTCAGATTAT 24880 || || |||||||||| || || ||||||||||| ||| ||| |||| |||||| Sbjct 255486 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCG---CACATTGTCCGATTAT 255430 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||||||||| || ||| |||| Sbjct 255429 AATATTCAGAAGGAATCGACGCTGCACCTGGT 255398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| ||||||| || ||||||||||| || || | ||||| ||||| | Sbjct 256596 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 256537 Query 24764 GACACAGTAGA-AACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || || | ||| ||||| ||||| ||||| || ||||| || || || || Sbjct 256536 GACACCATCGAGAATGTTAAGGCAAAA-ATCCAGGACAAGGAGGGAATTCCACCAGACCA 256478 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || |||||||| || || Sbjct 256477 GCAGCGATTGATCTTCGCGGG 256457 >seq1299 Length=73203 Score = 122 bits (134), Expect = 8e-23 Identities = 156/212 (74%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || | || |||||||| || || |||||||| || || | Sbjct 16323 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 16382 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||| || |||||||| ||||| || || || ||||| Sbjct 16383 GATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAG 16442 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACATG-TCAGATTAT 24880 || || |||||||||| || || || ||||||| ||| |||| ||||||||| Sbjct 16443 CAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGT---ACATTATCAGATTAT 16499 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||| ||||| || ||||| ||| |||| Sbjct 16500 AATATTCAGAAGGAGTCAACACTGCACCTGGT 16531 >seq2629 Length=74368 Score = 105 bits (116), Expect = 6e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| || ||| | ||||| |||| |||||||| |||||||| || || ||| || Sbjct 47956 ACCATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 48015 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | || ||| | || | |||||| || || || ||||||||||| |||||||| ||| Sbjct 48016 TCAGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGAT 48075 Query 24821 CAACAACGTTTGATCTTTGCCGG 24843 || || || ||||| ||||| || Sbjct 48076 CAGCAGCGGTTGATTTTTGCAGG 48098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449842313208680