Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2168 109 9e-19 seq1299 96.9 5e-15 seq2629 91.5 2e-13 seq2089 87.8 3e-12 >seq2168 Length=114285 Score = 109 bits (120), Expect = 9e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || || ||||| ||||| || ||||| |||| |||||| || Sbjct 62404 TGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCCG 62463 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || |||||| ||| ||| || || |||||||| ||||||| Sbjct 62464 ATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAAC 62523 Query 146152 AAAGACTCATTTTTGCAGGT 146171 || |||| |||||||||||| Sbjct 62524 AACGACTTATTTTTGCAGGT 62543 >seq1299 Length=73203 Score = 96.9 bits (106), Expect = 5e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || || || || ||||| || || | || || || | | Sbjct 16324 TGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCTG 16383 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| |||| || ||| ||||| ||| || |||||||||||||| ||||| | Sbjct 16384 ATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAGC 16443 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || ||||| || || ||||| || || | | || ||| |||||||||||| Sbjct 16444 AGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAATA 16503 Query 146212 TACAAAAAGAATCGAC 146227 | || || || || || Sbjct 16504 TTCAGAAGGAGTCAAC 16519 >seq2629 Length=74368 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/142 (75%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || | ||||| ||||| || ||||| ||||| |||| || ||| | | | Sbjct 47960 TGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA- 48018 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| | ||||||||| |||||||| ||||||||||| || || ||||| Sbjct 48019 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 48078 Query 146151 CAAAGACTCATTTTTGCAGGTA 146172 || | | ||||||||||||| Sbjct 48079 CAGCGGTTGATTTTTGCAGGTA 48100 >seq2089 Length=376597 Score = 87.8 bits (96), Expect = 3e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || || || || ||||| || || | || || || | | Sbjct 255605 TGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCTG 255546 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||| ||| || || ||| || |||||||||||||| ||||| | Sbjct 255545 ATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAGC 255486 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | |||| || ||||| || || || | || || | | || || | |||||||||| Sbjct 255485 AGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAATA 255426 Query 146212 TACAAAAAGAATCGAC 146227 | || || |||||||| Sbjct 255425 TTCAGAAGGAATCGAC 255410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786069789976520