Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2089 105 5e-18 seq1299 91.5 1e-13 seq2168 86.0 5e-12 >seq2089 Length=376597 Score = 105 bits (116), Expect = 5e-18 Identities = 113/148 (76%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| |||| | | ||||| || |||||||||||||| |||||||||| |||| | Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCT 256838 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | ||||| ||| || ||||||||||| || ||||| ||||| | Sbjct 256839 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 256898 Query 29767 GTTTTAACAAATATCTGCAT-TTTAAAA 29793 ||||| || || || ||||| |||| || Sbjct 256899 GTTTTCACGAAGATTTGCATGTTTACAA 256926 >seq1299 Length=73203 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 29665 TGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTG 29724 ||||| || | || ||||| || |||||||||| |||| ||| ||| |||| | ||| Sbjct 15115 TGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCTTTAACATTTTCAATTGTG 15056 Query 29725 TCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGC 29784 || ||| || ||||||||||| || ||||| ||||| | ||||| ||||| || ||| Sbjct 15055 TCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGTGTTTTTACAAAGATTTGC 14996 Query 29785 AT-TTTAAAA 29793 || |||| || Sbjct 14995 ATGTTTACAA 14986 >seq2168 Length=114285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| | || | || ||| ||||| || ||||||||||| || ||||| |||||| | Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTG-AATTTTAGC 62484 Query 29707 -TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAA 29765 || ||| | || | || || || |||||| ||||| || || || || |||||||| Sbjct 62483 CTTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 62424 Query 29766 GGTTTTAACAAATATCTGCATTTT 29789 || || || ||||||||||| || Sbjct 62423 CGTCTTCACGAATATCTGCATCTT 62400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385173044841171