Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq2029 179 3e-39 seq1968 141 7e-28 seq2070 86.0 5e-11 >seq2029 Length=1413229 Score = 179 bits (198), Expect = 3e-39 Identities = 261/368 (71%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || | |||||| |||| |||||| || |||||||| || ||||| | | |||| Sbjct 334566 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 334507 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || |||||||||||| || | ||||||||||||||||| ||||||||| ||||| ||| Sbjct 334506 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAATCATTAAAGTAT 334447 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGT 282511 || || || |||||||| ||||| | || | | || | | |||| || || | Sbjct 334446 GCGGGGACTGTAATAACAGCATCCTTGACCGCGTGACCCAGAAAAGCTTCCGCCGTCTCC 334387 Query 282512 TTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATTCATTT 282571 ||||||||| |||| ||| || ||||| | |||||||| | | ||| | || Sbjct 334386 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAAGTCTTCGTCTCTCCC 334327 Query 282572 TGATATGATACTTCAAAATATGGTTT---ATTACCAACATTAATAACTTTAAATGGCCAA 282628 | ||| || | | | ||||| | |||| |||| | ||||||||||||||| Sbjct 334326 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACTTTAAATGGCCAA 334267 Query 282629 TATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCA 282688 | ||||||||| ||||| || | |||| ||| | | |||||| | |||||| || Sbjct 334266 TGTTTCATATCCGATTGCACTGATCCATCATCAAACTTACGACCAATCAGTCGTTTAGCG 334207 Query 282689 TCAAAAAT 282696 || |||| Sbjct 334206 TCTGAAAT 334199 Score = 113 bits (124), Expect = 3e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 281341 CATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATTATTAGTAATAGTAATATTCTT 281400 ||| | ||| || | ||| | || || | ||| || ||| ||||| ||||| || || Sbjct 336099 CATCCGCTCGATCTCATCCTTTGACAAACGTCCTTTATCATTGGTAATGGTAATTTTGTT 336040 Query 281401 GGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATC 281460 |||| ||| |||||||| ||||| ||||| |||||||| ||||| || | ||| Sbjct 336039 TTGTTTGCCTGTGGATTTATCCTGGGCAGAAACATTCAGAATACCGTTGGCGTCAATATC 335980 Query 281461 AAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAA 281520 ||| |||||||||||||| || || || | ||||||| || || || ||| | || Sbjct 335979 AAACGTGACTTCAATTTGCGGCACACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAA 335920 Query 281521 TGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAA 281570 | | || || ||||| |||||||| || |||||||| ||| ||| Sbjct 335919 TTTACCAAGCAAGTTATTGTCTTTAGTCAAAGCACGTTCACCTTCGTAAA 335870 Score = 109 bits (120), Expect = 4e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 282692 AAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 282751 |||| ||||||| ||||| | |||| |||||| |||||||||||| ||||| ||| || Sbjct 334047 AAAACAGTATTGTGCGGATTCATTGCAACTTGATTTTTGGCTGCATCGCCAATAAGACGT 333988 Query 282752 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCT 282796 || || || ||||||| |||||| ||||| ||||| ||||||||| Sbjct 333987 TCAGTATCGGTAAATGCAACATACGATGGTGTTGTACGATTACCT 333943 >seq1968 Length=154426 Score = 141 bits (156), Expect = 7e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 282323 TTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| ||| || ||||| | ||||| |||| ||| ||||| || |||||||| || || Sbjct 58774 TTGCCTTCCTTCTTATCCAATCCATATGCAATAGCGGCAGCTGTAGGTTCATTGATGATA 58715 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | |||||| || || ||||| | ||||||||||| || ||||| | ||||| ||| Sbjct 58714 CGAACAACATTGAGGCCGGCAATAGTACCTGCATCTTTGGTAGCTTGACGTTGTGCATCA 58655 Query 282443 TTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTT 282502 ||||| || ||||| || |||| ||| |||| | ||||||| ||||| | ||| || | Sbjct 58654 TTAAAGTAAGCAGGTACCGTAACAACTGCATGTTTTACTTCCTTTCCTAGATATGCTTCT 58595 Query 282503 GCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAAT 282540 || | | |||||||| | | || ||||| |||||| Sbjct 58594 GCGATCTCCTTCATTTTGCCAAGAACCATTGCTGAAAT 58557 Score = 107 bits (118), Expect = 1e-17 Identities = 166/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 282620 AATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAAT 282679 || ||||||| ||| |||||| ||| ||| || || || | |||| ||||| | Sbjct 58388 AAAGGCCAATGTTTGATATCTTGTTGTACAGTTGAATCCTTGTACTCTCGGCCAATCAGA 58329 Query 282680 CGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCT 282739 ||||| ||||||||| |||||| ||||| || |||| |||||||||||| Sbjct 58328 CGTTTAACATCAAAAACAGTATTTTCCGGATTTGTTGTTAACTGATTTTTGGCTGCATCA 58269 Query 282740 CCAATCAGATGTT-----CTGTC-TCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 ||||| ||| | | || || | || |||| || ||||| ||||| | |||||| Sbjct 58268 CCAATAAGACGCTCACCGCTTTCACCAGTGAATGCTACGTATGACGGAGTGATCCGATTA 58209 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACT 282849 || || ||||| ||||||||||| ||| ||||||| | || || ||||| || Sbjct 58208 CCCTGTTCATTTGCAATAATTTCCACTCGTCCATTTTTATAGACTCCAACACAGCT 58153 >seq2070 Length=155798 Score = 86.0 bits (94), Expect = 5e-11 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 917175 TTCGTTATAATGATGAGGAAATTTCAAATCGATTCCACCAAAATGAATATCAATACTATT 917234 |||||||| |||||| |||||||||||||| | |||||| ||||||||| | | | | Sbjct 108099 TTCGTTATCATGATGTGGAAATTTCAAATCAAAACCACCAGCATGAATATCTAAAGAAGT 108040 Query 917235 TCCTAATGTTTTCTTGATCATGGCTGAGCATTCAATATGCCAACCAGGTACACCAAA 917291 || | ||||| |||| ||||| || || ||||||||||||||| ||| || Sbjct 108039 ACCACAGATTTTCGAACTCATTGCTGAACACTCGATATGCCAACCAGGTCTACCTAA 107983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740147739445806