Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2089 187 5e-42 seq1299 178 3e-39 seq2168 118 2e-21 seq2629 89.7 1e-12 >seq2089 Length=376597 Score = 187 bits (206), Expect = 5e-42 Identities = 171/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||||| || ||||| ||||| ||||||||||| || | | | |||| Sbjct 255392 CGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGTGCGACCG 255451 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || |||||||| |||| || |||||||| || || |||||||| Sbjct 255452 TCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 255511 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||||||||||||| |||||||| || |||||| || || ||||| | ||||| Sbjct 255512 TCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATG 255571 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||||||||| ||||||||| Sbjct 255572 GTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 123 bits (136), Expect = 5e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 82665 TGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATC 82724 || || |||||||| || || | || ||||||||||| || ||||| || || |||||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 82725 TTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCT 82784 || || ||||||||||| || || ||| || || ||||| || || ||||||||||| Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 82785 GTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || |||||||| || ||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | || || ||||| || || || ||||| ||||| || |||||| Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCT 256838 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || || || ||||| | ||| ||||| || || |||| Sbjct 256839 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 256898 Query 82791 GTCTTTACAAATATCTGCAT 82810 || || || || || ||||| Sbjct 256899 GTTTTCACGAAGATTTGCAT 256918 >seq1299 Length=73203 Score = 178 bits (196), Expect = 3e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || ||||| | |||||| || || || ||||| ||||||||||| |||| | | |||| Sbjct 16537 CGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCG 16478 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || | ||| || || |||||||| |||| || |||||||| || || |||||||| Sbjct 16477 TCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTG 16418 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 |||||||| |||||||| || ||||| || |||||| || || ||||| | ||||| Sbjct 16417 TCTTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATG 16358 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 || || || ||||| ||||||||||| ||||||||| Sbjct 16357 GTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 || |||||||| || || | |||||||| ||||| || ||||||||||| |||| ||| Sbjct 15814 TTGCCAGCAAAAATAAGACGCTGTTGATCCGGAGGGATCCCTTCCTTATCCTGAACCTTG 15755 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || ||||||||||| || || ||| || || ||||| || || |||||| ||| ||| Sbjct 15754 GCCTTTACATTTTCGATTGTGTCAGAAGTCTCAACTTCTAAGGTGATCGTCATGCTCGTC 15695 Query 82788 AACGTCTTTACAAATATCTGCA 82809 || || |||||||| || |||| Sbjct 15694 AATGTTTTTACAAAAATTTGCA 15673 Score = 100 bits (110), Expect = 6e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || || | || || |||| ||| || |||||||| ||||| || |||||| Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||||||||| || || || || ||||| | ||| ||||| || || |||| Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 82791 GTCTTTACAAATATCTGCAT 82810 || |||||||| || ||||| Sbjct 15013 GTTTTTACAAAGATTTGCAT 14994 >seq2168 Length=114285 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || |||| ||||||||| || || || || |||||||||||||| || || Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790 || ||||| ||||| ||||| | |||||| || | || |||||||| || || ||| Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 82791 GTCTTTACAAATATCTGCAT 82810 ||||| || ||||||||||| Sbjct 62422 GTCTTCACGAATATCTGCAT 62403 >seq2629 Length=74368 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730 || ||||| || | | || |||||||||||||| ||||| || || || || || ||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 82731 TTTACATTTTCAATCGTATCATTAGG-TTCTACTTCCAAAGTTATCGTCTTGCCTGTCAA 82789 |||||||| ||||| ||||| | ||| ||| || || | || ||||| || || || || Sbjct 48038 TTTACATTCTCAATTGTATC-TGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 47980 Query 82790 CGTCTTTACAAATATCTGCAT 82810 || || ||||| || ||||| Sbjct 47979 AGTTTTGACAAAAATTTGCAT 47959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981703529352709