Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2629 95.1 8e-15 seq1299 93.3 3e-14 seq2089 91.5 1e-13 >seq2629 Length=74368 Score = 95.1 bits (104), Expect = 8e-15 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33610 CCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGT 33669 || ||||||||||| |||||||||||| | || | ||||||||||| |||||| | Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 33670 TTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAA 33728 || | ||| ||| || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 48038 TTTA-CATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 47980 Query 33729 CGTTTTTACAAAGATCTGCATAGT 33752 ||||| ||||| || ||||| || Sbjct 47979 AGTTTTGACAAAAATTTGCATGGT 47956 >seq1299 Length=73203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || || || ||||| || | ||| || |||| |||||||| || || ||||| Sbjct 16514 CTCCTTCTGAATATTATAATCTGATAATGTACGACCGTCCTCCAATTGCTTGCCCGCAAA 16455 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||||||| | || | ||||| ||||| |||||| || || || | Sbjct 16454 GATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATTTT-TGCTTTGACGT 16396 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 || | || || | ||||| || | || || |||||||| || || || |||| Sbjct 16395 TTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTA 16336 Query 33737 CAAAGATCTGCAT 33749 |||| |||||||| Sbjct 16335 CAAAAATCTGCAT 16323 >seq2089 Length=376597 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || || |||||||| | |||||| |||| |||| || || || ||||| Sbjct 255416 TCCTTCTGAATATTATAATCGGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 255475 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||||||||| | || | ||||| ||||| ||| || || || |||| Sbjct 255476 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTT-TGCTTTGACATT 255534 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 || | || || | ||||| || | || || |||||||| || || || ||||| Sbjct 255535 TTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTAC 255594 Query 33738 AAAGATCTGCAT 33749 ||| |||||||| Sbjct 255595 AAAAATCTGCAT 255606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328664616227520