Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1299 172 2e-37 seq2089 163 9e-35 seq2029 150 5e-31 seq1991 150 5e-31 seq1968 147 7e-30 seq2629 118 3e-21 seq2168 118 3e-21 >seq1299 Length=73203 Score = 172 bits (190), Expect = 2e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || || || || ||||| || |||||||||||||| ||| Sbjct 16549 CCACCACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGAT 16490 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 ||||| || || || || | ||| || || |||||||| || || |||||||| || ||| Sbjct 16489 AATGTACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 16430 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || |||||||| ||||| || || || || | |||||| | || ||| Sbjct 16429 ATGCCTTCCTTGTCTTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACT 16370 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | || || || || | || |||||||||||||||||| Sbjct 16369 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 104 bits (114), Expect = 7e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || ||||| || ||||| ||||| || ||||| |||||||||| || Sbjct 15814 TTGCCAGCAAAAATAAGACGCTGTTGATCCGGAGGGATCCCTTCCTTATCCTGAACCTTG 15755 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || |||||||| || || | ||||| | |||||||| | || | ||| | | || Sbjct 15754 GCCTTTACATTTTCGATTGTGTCAGAAGTCTCAACTTCTAAGGTGATCGTCATGCTCGTC 15695 Query 140715 AGTGTTTTTACAAAAATCTGCA 140736 | ||||||||||||||| |||| Sbjct 15694 AATGTTTTTACAAAAATTTGCA 15673 Score = 100 bits (110), Expect = 9e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || || || ||||| || | ||| || ||||| || || || ||||| ||| Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | || || | || |||||||| || | || ||||| || ||| Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||||||||| || ||||| Sbjct 15013 GTTTTTACAAAGATTTGCAT 14994 Score = 84.2 bits (92), Expect = 7e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| || ||||| | ||| || || ||||| | |||||| || || || || |||||||| Sbjct 16325 CATTCCTCCACGCAGTCTAAGCACCAGATGCAAAGTAGATTCCTTCTGGATGTTATAATC 16266 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 ||| ||||| || |||||||| ||||| ||||| | ||| Sbjct 16265 AGAAAATGTGCGACCATCTTCCAGTTGCTTTCCTGAAAA 16227 >seq2089 Length=376597 Score = 163 bits (180), Expect = 9e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| || || || || || || || |||||||||||||| || Sbjct 255380 CCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGAC 255439 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 ||||| || || || || || || || || |||||||| || || |||||||| || ||| Sbjct 255440 AATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGA 255499 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACT 140690 || ||||| || || ||||| || ||||| ||||| || || | |||||| | || ||| Sbjct 255500 ATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACT 255559 Query 140691 TCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || ||||| | || || || || | || |||||||||||||||||| Sbjct 255560 TCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 120 bits (132), Expect = 9e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 140592 TGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATT 140651 || || |||||||| || || || |||||||| ||||| || |||||||| |||||||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 140652 TTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCG 140711 || || |||||||| || || | ||||| | |||||||| | || | ||||| || Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 140712 GTTAGTGTTTTTACAAAAATCTGCAT 140737 || | ||||||||||||||| ||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 87.8 bits (96), Expect = 5e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| ||| ||||| || | | || ||||||||||| |||||||| ||||| ||||||| Sbjct 256244 TTTGCATGCCACCTCGGAGGCGAAGTACAAGATGAAGTGTAGACTCCTTTTGGATATTAT 256303 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAA 140605 |||| || || || || |||||||| | |||||| || |||| Sbjct 256304 AATCGGACAAGGTACGACCATCTTCCAATTGTTTACCTACAAA 256346 >seq2029 Length=1413229 Score = 150 bits (166), Expect = 5e-31 Identities = 247/353 (70%), Gaps = 6/353 (2%) Strand=Plus/Plus Query 349388 GATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAA 349447 || ||||| ||||| |||||| | | ||| ||| ||| ||||| ||| | ||| Sbjct 334205 GACGCTAAACGACTGATTGGTCGTAAGTTTGATGATGGATCAGTGCAATCGGATATGAAA 334264 Query 349448 CATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATAT 349507 |||| || |||| || || | |||| |||||| | | |||||||||| Sbjct 334265 CATTGGCCATTTAAAGTAGTGAATGCTGGTGGTGGTAAACCTAAAGTGCAGGTTGAATAC 334324 Query 349508 AAAGGTGA-ACAAAAACAATTTTTACCC--GAAGAAATTTCATCAATGGTTTTAGTTAAA 349564 || || || || || || |||||| | ||||| ||||| || |||||||| |||||| Sbjct 334325 AAGGGAGAGACGAAGAC---TTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAA 334381 Query 349565 ATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTA 349624 |||||||| | || ||||| | | | ||| | | || | |||||||||||||| || Sbjct 334382 ATGAAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTC 334441 Query 349625 CCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGG 349684 || || || ||||||||| | || || || || |||||| | || ||||| || Sbjct 334442 CCCGCATACTTTAATGATTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGT 334501 Query 349685 TTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 ||||||||||| | || || || ||||| || || || || ||||| ||||| Sbjct 334502 CTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 334554 Score = 107 bits (118), Expect = 6e-18 Identities = 182/261 (70%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 350029 TATTGAAATTGATTCTCTTGCT-GATGGCAAAGATTTCTTTTCATCTATTACACGTGCTC 350087 ||| ||||||||||| ||| | || || | ||||||| | ||| || ||||||| Sbjct 335152 TATCGAAATTGATTC-ATTGTTCGAGGGAATTGATTTCTACACCAATATCACCCGTGCTC 335210 Query 350088 GGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 | ||||| ||||||||| |||||||| | |||| |||||||| || || || | | Sbjct 335211 GCTTTGAGGAATTATGTGCTGATCTTTTCCGTTCAACTATGGATCCAGTTGAGAAGGCAC 335270 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| || ||| ||| || | |||| | || |||| ||||| || | Sbjct 335271 TCCGTGATGCTAAGATGGACAAGGCCCAAGTCCATGACATTGTACTAGTAGGTGGATCAA 335330 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | |||||||| ||||| || || | ||||| || || ||| ||||||||||| || Sbjct 335331 CCCGTATTCCGAAAGTGCAGAAGCTCCTATCGGATTTCTTTTCTGGCAAAGAACTGAATA 335390 Query 350268 GATCAATTAATCCAGATGAAG 350288 | || |||||||| |||| Sbjct 335391 AAAGCATCAATCCAGACGAAG 335411 Score = 93.3 bits (102), Expect = 1e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349770 TTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGG 349829 ||||||| |||||| | ||||||||||| ||||||||||| | ||||| |||| || | Sbjct 334664 TTCTTATCTTTGATCTTGGTGGTGGTACATTTGATGTATCTATTCTAACCATTGAGGATG 334723 Query 349830 GAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGG 349875 | ||||| ||||| || | || ||||| ||||| ||||| || || Sbjct 334724 GTATTTTCGAAGTCAAGTCTACAGCTGGGGATACTCATCTCGGAGG 334769 Score = 89.7 bits (98), Expect = 2e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 183692 ACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATATT 183751 ||| || | ||| ||||| ||||| |||| || ||||| || || || || ||||| | Sbjct 334770 ACCTCCGAGATGAGTATCCCCAGCTGTAGACTTGACTTCGAAAATACCATCCTCAATGGT 334711 Query 183752 TAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || ||| ||||||||||||||||||||||| | |||||| Sbjct 334710 TAGAATAGATACATCAAATGTACCACCACCAAGATCAAA 334672 Score = 86.0 bits (94), Expect = 2e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 349282 AGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAAACTGAGCGTATGATTGGTGA 349341 |||||| | ||||| ||||| || |||||||||||||| ||||| ||| | ||||| || Sbjct 333943 AGGTAATCGTACAACACCATCGTATGTTGCATTTACCGATACTGAACGTCTTATTGGCGA 334002 Query 349342 TTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTT 349386 | | || |||||||||| ||| ||||| | ||||| ||||| Sbjct 334003 TGCAGCCAAAAATCAAGTTGCAATGAATCCGCACAATACTGTTTT 334047 >seq1991 Length=1961302 Score = 150 bits (166), Expect = 5e-31 Identities = 146/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 130740 CCTCCAAGCATAACAAAATCAGCTCCTGCTCCAAATGCTTTCGCAATATCCCCGGGAGAT 130799 ||||||| ||| ||||||||||||||||| |||||||||||||||| ||| || ||| | Sbjct 1668979 CCTCCAATCATCACAAAATCAGCTCCTGCACCAAATGCTTTCGCAACATCTCCAGGATTT 1668920 Query 130800 TTACAACCCCCATCAGCAATAACATGTCCATTTAATCCATGTGCCGCATCAGCACACTCT 130859 | || || ||||| | ||||| || || || |||||||| ||||||||||| || Sbjct 1668919 GTGCATCCTCCATCGCTCACCACATGCCCGTTCAAACCATGTGCAGCATCAGCACATTCC 1668860 Query 130860 GAAATAGCAGAAAGTTGTGGATATCCAACTCCAGTTACTTTTCTTGTAGTACAAACAGCA 130919 ||| ||| | ||||||||| |||||||||||| || | ||| |||||||| | | Sbjct 1668859 AAAACAGCGCTCAATTGTGGATAGCCAACTCCAGTTTTCTTACGTGTCGTACAAACTGAA 1668800 Query 130920 CCTGGACC 130927 || ||||| Sbjct 1668799 CCAGGACC 1668792 >seq1968 Length=154426 Score = 147 bits (162), Expect = 7e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 349531 ACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTT 349590 ||| || || |||||| |||||||| | | ||||||||||| || || ||||||||| | Sbjct 58547 ACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCAGAAGCATATCT 58606 Query 349591 AGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCG 349650 ||| | ||||| |||| ||| |||| ||||| || || ||||||||||| || || Sbjct 58607 AGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAATGATGCACAACG 58666 Query 349651 TTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGA 349710 | || || |||||||| || | ||||| || | |||||| | | || || ||||| Sbjct 58667 TCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTCAATGTTGTTCGTATCATCAATGA 58726 Query 349711 ACCCACTGCTGCAGCAATTGCATATGGGCTTGATAA 349746 ||| || ||||| || ||||||||||| | ||||| Sbjct 58727 ACCTACAGCTGCCGCTATTGCATATGGATTGGATAA 58762 Score = 100 bits (110), Expect = 9e-16 Identities = 132/182 (73%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 349232 TGTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGA 349291 ||||||| || | |||||| || || ||||| ||||||||||| || ||||| | Sbjct 58156 TGTGTTGGAGTCTATAAAAATGGACGAGTGGAAATTATTGCAAATGAACAGGGTAATCGG 58215 Query 349292 ACAACGCCATCATACGTTGCATTTAC---CGAAA---CTGAGCGTATGATTGGTGATTCT 349345 | || || |||||||| ||||| || |||| ||||||| | ||||||||| | Sbjct 58216 ATCACTCCGTCATACGTAGCATTCACTGGTGAAAGCGGTGAGCGTCTTATTGGTGATGCA 58275 Query 349346 GCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATT 349405 || |||||||| | | ||||| ||||||| |||||||||| ||| || || ||| Sbjct 58276 GCCAAAAATCAGTTAACAACAAATCCGGAAAATACTGTTTTTGATGTTAAACGTCTGATT 58335 Query 349406 GG 349407 || Sbjct 58336 GG 58337 Score = 89.7 bits (98), Expect = 2e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 349766 AATATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAA 349825 ||||||||| |||| ||| | ||||||||||| |||||||| || | | ||| |||| Sbjct 59061 AATATTCTTGTTTTCGATCTTGGTGGTGGTACATTTGATGTGTCGATGTTGACAATTGAT 59120 Query 349826 GAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTT 349885 | || |||| ||||| || ||| ||||||||| ||| | ||||| ||||||||| Sbjct 59121 AATGGTGTTTTCGAAGTATTGGCTACTAATGGTGATACTCATTTGGGTGGTGAAGATTTT 59180 Query 349886 GA 349887 || Sbjct 59181 GA 59182 Score = 87.8 bits (96), Expect = 5e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 ||||||||||||||||| ||||| ||||| ||| |||||| ||||| || | || Sbjct 59182 TCAAAATCTTCACCACCCAAATGAGTATCACCATTAGTAGCCAATACTTCGAAAACACCA 59123 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAAA 183791 | ||||| | || || || |||||||||||||||||||| | ||| ||| Sbjct 59122 TTATCAATTGTCAACATCGACACATCAAATGTACCACCACCAAGATCGAAA 59072 >seq2629 Length=74368 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | || |||||||| ||||| || |||||||| ||||| ||||| ||| Sbjct 48098 CCTGCAAAAATCAACCGCTGCTGATCTGGAGGTATGCCTTCTTTGTCCTGTATTTTCGCT 48039 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| ||||| | ||| || | ||| || ||||| |||| || || || |||| Sbjct 48038 TTTACATTCTCAATTGTATCTGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 47979 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||| ||||| Sbjct 47978 GTTTTGACAAAAATTTGCAT 47959 >seq2168 Length=114285 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || || ||||| |||||||| ||||| || || ||||| ||||||||||| Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| | ||| || | ||| || ||||| |||| |||||||| |||| Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || || || |||||||| Sbjct 62422 GTCTTCACGAATATCTGCAT 62403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515063539029293