Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2168 114 1e-20 seq2089 114 1e-20 seq1299 107 2e-18 >seq2168 Length=114285 Score = 114 bits (126), Expect = 1e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || |||||| | || || ||||| ||||| |||||||| || || Sbjct 62403 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 62462 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| |||||||||||||||| || |||||||| ||||| || || || Sbjct 62463 GATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 62522 Query 27526 CAGCGTCTAATTTTTGCTGGT 27546 || || || |||||||| ||| Sbjct 62523 CAACGACTTATTTTTGCAGGT 62543 >seq2089 Length=376597 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || |||||||| || || | || |||||| | | Sbjct 256250 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 256191 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | ||||| || ||||||||||| || || || |||||||| ||| Sbjct 256190 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCAG 256131 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCA 27551 ||||| || ||||||||||||||||| Sbjct 256130 CAGCGCCTTATTTTTGCTGGTAAGCA 256105 Score = 113 bits (124), Expect = 5e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || |||||||| || || || || | || || || || | Sbjct 256596 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 256537 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| ||||| |||||||||||||||||||| ||||||||| Sbjct 256536 GACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 256477 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | || || || |||| Sbjct 256476 CAGCGATTGATCTTCGCGGGTA 256455 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || || || || || || |||||||| || ||| | Sbjct 256918 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 256859 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||| || ||||||||||| ||||| ||||||||| Sbjct 256858 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGACCAG 256799 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || || ||||| |||| Sbjct 256798 CAGCGCCTTATATTTGCAGGTA 256777 >seq1299 Length=73203 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || || || || || || || |||||||| || ||| | Sbjct 14994 ATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 15053 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | || || ||||| || |||||||| || || ||| |||||||| Sbjct 15054 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTGCAGACCAG 15113 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || |||||||| |||| Sbjct 15114 CAGCGCCTTATTTTTGCAGGTA 15135 Score = 107 bits (118), Expect = 2e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||| || || ||||| || || || || || | || || ||| || | Sbjct 15313 ATGCAAATCTTTGTTAAAACTCTTACTGGTAAAACAATCACATTGGAAGTGGAGACATCT 15372 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| | | | ||| | ||||| ||||| |||||||||||||||||||| |||| ||| Sbjct 15373 GATACCGTCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGGCCAA 15432 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| | ||||| || |||| Sbjct 15433 CAGCGATTGATTTTCGCGGGTA 15454 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||| ||||| || || | || ||| ||| || || | || |||||| | || Sbjct 15673 TGCAAATTTTTGTAAAAACATTGACGAGCATGACGATCACCTTAGAAGTTGAGACTTCTG 15732 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | || | |||| | ||||| || ||||||| ||||| || || ||||| || || | Sbjct 15733 ACACAATCGAAAATGTAAAGGCCAAGGTTCAGGATAAGGAAGGGATCCCTCCGGATCAAC 15792 Query 27527 AGCGTCTAATTTTTGCTGGTAAGC 27550 ||||||| ||||||||||| |||| Sbjct 15793 AGCGTCTTATTTTTGCTGGCAAGC 15816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570240315980720