Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq1299 140 3e-28 seq2089 131 1e-25 seq2629 96.9 3e-15 seq2168 86.0 5e-12 >seq1299 Length=73203 Score = 140 bits (154), Expect = 3e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||| |||| || || | || || || |||||||| | || Sbjct 16323 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 16382 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||||||||||||||| |||||||| ||||| ||||| Sbjct 16383 GATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAG 16442 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| |||||||| ||| || || | || ||||| || Sbjct 16443 CAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAAT 16502 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| |||||||| || | || ||||| | || | || ||||| Sbjct 16503 ATTCAGAAGGAGTCAACACTGCACCTGGTTCTCCGCCTTCGTGGTGG 16549 Score = 93.3 bits (102), Expect = 4e-14 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||||||||| ||||| || || | || |||||||||||||| | || Sbjct 14993 CATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTC 15052 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| |||||| |||||||| ||||| || || | || || Sbjct 15053 AGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTGCAGACCA 15112 Query 27107 ACAGCG 27112 ||||| Sbjct 15113 GCAGCG 15118 >seq2089 Length=376597 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| ||| |||| || || | || || || |||||||| | || Sbjct 255606 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 255547 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | |||||| ||| ||||||||||| |||||||| ||||| ||||| Sbjct 255546 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 255487 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || ||||| || |||| ||| || || | |||||||| || Sbjct 255486 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAAT 255427 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||| ||||| ||||| | || ||||| | || | || ||||| Sbjct 255426 ATTCAGAAGGAATCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 255380 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || || || ||||| ||||| || || | || |||||||||||||| | || Sbjct 256919 CATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTC 256860 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | || ||| |||||| |||||||| || || || || || || || Sbjct 256859 AGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGACCA 256800 Query 27107 ACAGCGTTTAATAT 27120 ||||| | |||| Sbjct 256799 GCAGCGCCTTATAT 256786 >seq2629 Length=74368 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 ||||||| || ||||| |||||| | || || || | ||||| ||||| || ||| | | Sbjct 47957 CCATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCT 48016 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 | || | ||||||| || ||| ||||| || ||||||||||||||||| || |||| Sbjct 48017 CAGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATC 48076 Query 27106 AACAGCGTTTAAT 27118 | ||||| || || Sbjct 48077 AGCAGCGGTTGAT 48089 >seq2168 Length=114285 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||||||| || || || | || || ||| | ||||| ||||| || ||| ||||| Sbjct 62403 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 62462 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || ||||||||||| || || || || ||||| |||||| Sbjct 62463 GATACCATTGAGAATGTGAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 62522 Query 27108 CAGCG 27112 || || Sbjct 62523 CAACG 62527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434864953965120