Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2089 145 2e-29 seq1299 141 2e-28 seq2168 91.5 3e-13 >seq2089 Length=376597 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || || || || || || |||||||| | | || Sbjct 255385 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 255444 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||||||||||||| || ||||| || || || || || || |||| || Sbjct 255445 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 255504 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || |||||| ||| || |||||||| || ||||| || || ||||| Sbjct 255505 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 255564 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | |||||||||||| | ||||||| Sbjct 255565 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 ||||| || || || |||||||| || || || ||||| | ||||| |||||||| ||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 211029 TTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCC 211088 || || || |||||||| |||||||| ||||| || | ||||||||||| ||| Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 211089 GTGAGAGTCTTTACAAACACCTGCAT 211114 || | || |||||||| | ||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 || |||||||| | || || ||||| || |||| ||| |||||||||||||| ||| Sbjct 256457 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 256516 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || || |||||||||||||| ||| || || | ||||| || || || || ||| Sbjct 256517 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 256576 Query 211095 GTCTTTACAAACACCTGCAT 211114 || || ||||| | ||||| Sbjct 256577 GTTTTAACAAAGATTTGCAT 256596 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || |||||||| || ||||| || |||| || |||||||| || || ||| | Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCT 256838 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| || ||||| || || || || ||||||||||| ||||| || || Sbjct 256839 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 256898 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 || || || || | ||||| || Sbjct 256899 GTTTTCACGAAGATTTGCATGTT 256921 >seq1299 Length=73203 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || ||||| || || ||||| || || || |||||||| | | || Sbjct 16544 ACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGT 16485 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || |||| |||||||| || ||||| || || || || || || |||| || Sbjct 16484 ACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 16425 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||| || || ||| ||| ||||||||||| || ||||| || || ||||| Sbjct 16424 TTCCTTGTCTTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAG 16365 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || ||||| | |||||||||||| | ||||||| Sbjct 16364 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || |||||||| || ||||| | ||| | ||||||||||| || || ||| | Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 || || ||||| || ||||| || || || || ||||||||||| ||||| || || Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 || |||||||| | ||||| || Sbjct 15013 GTTTTTACAAAGATTTGCATGTT 14991 >seq2168 Length=114285 Score = 91.5 bits (100), Expect = 3e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 210975 CCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGT 211034 ||||| || ||||| |||||||| ||||| |||| || ||||| || || || || Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 211035 TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGA 211094 ||||| || || ||||| || || ||| ||||| || || ||||||||||| || | Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 211095 GTCTTTACAAACACCTGCATTTT 211117 ||||| || || | |||||| || Sbjct 62422 GTCTTCACGAATATCTGCATCTT 62400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159005993576315