Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq1299 111 1e-19 seq2089 105 5e-18 seq2629 82.4 5e-11 >seq1299 Length=73203 Score = 111 bits (122), Expect = 1e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | ||||| ||||| || || |||||||| || | | Sbjct 16322 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 16381 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | ||| ||||||| ||||| ||||| | || |||||||| Sbjct 16382 TGATACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCA 16441 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| ||| |||| |||| || || ||| ||||| || Sbjct 16442 GCAGCGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAA 16501 Query 23790 CATACAAAAAGAGTCCACA 23808 || || || ||||| ||| Sbjct 16502 TATTCAGAAGGAGTCAACA 16520 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || || || ||||| || || ||||||||||||||||| ||||| || | Sbjct 14991 AACATGCAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCT 15050 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| ||| |||| ||||| | |||||| ||||| |||||| | || |||| Sbjct 15051 TCAGACACAATTGAAAATGTTAAAGC-AAAAATACAAGACAAGGAAGGTATCCCTGCAGA 15109 Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750 || ||||| | || ||||| || Sbjct 15110 CCAGCAGCGCCTTATTTTTGCAGG 15133 >seq2089 Length=376597 Score = 105 bits (116), Expect = 5e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || | ||||| ||||| || || |||||||| || | | Sbjct 255607 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 255548 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| | |||| | ||| ||| ||| ||||| ||||| | || |||||||| Sbjct 255547 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 255488 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || ||||| |||| ||||| || |||||| || Sbjct 255487 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCCGATTATAA 255428 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 255427 TATTCAGAAGGAATCGAC 255410 Score = 100 bits (110), Expect = 2e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| || ||||| ||||| || || ||||||||||||||||| ||||| || | Sbjct 256921 AACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCT 256862 Query 23668 ACGGACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| ||| |||| ||||| | |||||| ||||| || ||| | |||||||| Sbjct 256861 TCAGACACAATTGAAAATGTTAAAGC-AAAAATACAAGACAAGGAGGGTATTCCGCCAGA 256803 Query 23727 TCAACAGCGTTTAATATTTGCCGG 23750 || ||||| | |||||||| || Sbjct 256802 CCAGCAGCGCCTTATATTTGCAGG 256779 >seq2629 Length=74368 Score = 82.4 bits (90), Expect = 5e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| || ||||| | || || |||||||| || || || || || ||| | Sbjct 47959 ATGCAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCA 48018 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| ||||| ||||||||||| |||| |||||||| Sbjct 48019 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAG 48078 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| || || ||||| || Sbjct 48079 CAGCGGTTGATTTTTGCAGG 48098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337969101274148