Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2089 141 2e-28 seq1299 113 1e-19 seq2221 91.5 4e-13 seq2168 87.8 4e-12 >seq2089 Length=376597 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || ||||| || || | ||| ||||||| ||| || Sbjct 255385 ACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCGGACAATGT 255444 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || |||||||| || || ||||| ||||| || || || || ||||| || Sbjct 255445 GCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 255504 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||||||| |||||| || ||| |||||| || || || | ||||| || | Sbjct 255505 TTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAG 255564 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||||||||| |||| || | |||||| Sbjct 255565 TGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 255607 Score = 114 bits (126), Expect = 3e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 ||||| ||||| || ||||| || || || || || || || ||||| ||||| || ||| Sbjct 256105 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCTGGAGGGATCCCTTCTTTGTCCTGAATC 256164 Query 225628 TTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCC 225687 || ||| ||| |||||| ||||| || | || || ||||| ||||||||||||||| Sbjct 256165 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 256224 Query 225688 GTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||||| || | |||||| Sbjct 256225 GTCAATGTTTTTACAAAAATTTGCAT 256250 Score = 104 bits (114), Expect = 6e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| || || ||||| ||||||||||| ||||||||||| || |||||| Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTAT-TTTTGC 256837 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | |||||||| || || |||| Sbjct 256838 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 256897 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||| | ||| | |||||| || Sbjct 256898 TGTTTTCACGAAGATTTGCATGTT 256921 Score = 100 bits (110), Expect = 7e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || |||||||| | ||| || ||||| || ||||| || |||||||| ||||| ||| | Sbjct 256457 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 256516 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 || ||| ||||||||||| || | |||||| || || ||||| || || || || | | Sbjct 256517 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 256576 Query 225694 GTTTTTATGAACACTTGCAT 225713 ||||| | || | |||||| Sbjct 256577 GTTTTAACAAAGATTTGCAT 256596 >seq1299 Length=73203 Score = 113 bits (124), Expect = 1e-19 Identities = 161/224 (72%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | || || ||||| || || || || || || | ||| ||||| | || || Sbjct 16544 ACGAAGGCGGAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGT 16485 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || | ||||| || || ||||| ||||| || || || || ||||| || Sbjct 16484 ACGACCGTCCTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCC 16425 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTC-ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 |||||||||||| || |||||||| || |||||| || || || | ||||| || | Sbjct 16424 TTCCTTGTCTTGAAT-TTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGA 16366 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 || || || || ||||||||||| |||| || | |||||| Sbjct 16365 GTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Score = 95.1 bits (104), Expect = 3e-14 Identities = 109/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || ||||| || || ||||| | || ||||||||||||||||| || |||||| Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTAT-TTTTGC 15075 Query 225634 -TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAA 225692 || ||| ||| || |||||||| | ||||| || | |||||||| || || |||| Sbjct 15074 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 15015 Query 225693 AGTTTTTATGAACACTTGCATTTT 225716 ||||||| || | |||||| || Sbjct 15014 TGTTTTTACAAAGATTTGCATGTT 14991 >seq2221 Length=5235760 Score = 91.5 bits (100), Expect = 4e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 |||||||||||||| || || || || ||||| || ||||| ||||| ||||| || || Sbjct 887536 AATATTTGACCATCTGTGATTGAAATTACATTGGTGGGGATGTAAGCGGAAACGTCGCCG 887595 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCA 4575 ||||| ||||| | ||| || | ||||| ||||| ||||| ||| Sbjct 887596 GCTTGAGTTTCAATAACTGGCAGTGCTGTAAGTGAGCCACCCCCA 887640 >seq2168 Length=114285 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 225574 CCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGC 225633 || || || |||||||||||||| || || |||||||| ||||| ||||| || || | Sbjct 62542 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 62483 Query 225634 TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAA 225693 |||||| || ||||| || || | ||| || || | || |||||||| || || || Sbjct 62482 TTCACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 62423 Query 225694 GTTTTTATGAACACTTGCATTTT 225716 || || | ||| | ||||| || Sbjct 62422 GTCTTCACGAATATCTGCATCTT 62400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192380989142714