Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq2089 102 2e-16 seq1299 102 2e-16 >seq2089 Length=376597 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || ||||| | ||||||||| | || || || ||||| ||||| |||||| | Sbjct 256779 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCCTTGTCTTGTATTTTTGCT 256838 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | |||||||| ||| ||||||||||| || ||||| || || || Sbjct 256839 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 256898 Query 152085 GTCTTCACGAAGACCTGCAT-TTTAC 152109 || |||||||||| ||||| ||||| Sbjct 256899 GTTTTCACGAAGATTTGCATGTTTAC 256924 >seq1299 Length=73203 Score = 102 bits (112), Expect = 2e-16 Identities = 111/146 (76%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 151965 CCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGT 152024 || || || ||||| | ||||||||| || | ||| |||||||| ||||| |||||| | Sbjct 15133 CCTGCAAAAATAAGGCGCTGCTGGTCTGCAGGGATACCTTCCTTGTCTTGTATTTTTGCT 15074 Query 152025 TTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGA 152084 || ||| | || | |||||||| ||| ||||||||||| || ||||| || || || Sbjct 15073 TTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAGT 15014 Query 152085 GTCTTCACGAAGACCTGCAT-TTTAC 152109 || || || |||| ||||| ||||| Sbjct 15013 GTTTTTACAAAGATTTGCATGTTTAC 14988 Score = 98.7 bits (108), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || || || || ||||| | ||| || | || || Sbjct 16535 GAGAACCAGGTGCAGTGTTGACTCCTTCTGAATATTATAATCTGATAATGTACGACCGTC 16476 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || | || || || ||||| || | |||||| || | | || |||||||| || Sbjct 16475 CTCCAATTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 16416 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 |||||||||| |||||| | || | | || ||| ||| ||||| || || || || Sbjct 16415 TTGAATTTTTGCTTTGACGTTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 16356 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||| ||||| | |||||| || || | ||||||| Sbjct 16355 TTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 16322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153675465092601