Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20malayi_20[genbank_20GCA_5F000002995.4_202016-03-25] 9,831 sequences; 94,140,818 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq1299 116 9e-21 seq2089 107 5e-18 seq2629 98.7 2e-15 >seq1299 Length=73203 Score = 116 bits (128), Expect = 9e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || ||| | || || ||||| || || ||||| ||||| || || Sbjct 16326 CAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCTGAT 16385 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| ||||||||| ||| ||||| ||||| ||||| || || || || ||||| Sbjct 16386 ACTATCGAAAACGTCAAAGCAAAAATTCAAGACAAGGAAGGCATTCCACCAGATCAGCAG 16445 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| ||||| || || || || | || || || | || | | |||||||| | Sbjct 16446 CGACTGATCTTTGCGGGCAAGCAATTGGAGGACGGTCGTACATTATCAGATTATAATATT 16505 Query 178104 CAAAAAGAATCAACACTGCATCTTGTT 178130 || || || ||||||||||| || ||| Sbjct 16506 CAGAAGGAGTCAACACTGCACCTGGTT 16532 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || ||||| || || |||||||||||||| || || ||||| |||||| Sbjct 14997 CAAATCTTTGTAAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCAGAC 15056 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || ||||| ||||| |||||| | |||||||| Sbjct 15057 ACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAAGGTATCCCTGCAGACCAGCAG 15116 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 15117 CGCCTTATTTTTGCAGG 15133 >seq2089 Length=376597 Score = 107 bits (118), Expect = 5e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || |||||||| || || ||||| ||||| | || |||||| || ||| Sbjct 256593 CAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCTGAC 256534 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| || || ||| || |||||||| || ||||| || || |||||||| Sbjct 256533 ACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAGCAG 256474 Query 178044 CGACTTATCTTCGCCGG 178060 ||| | |||||||| || Sbjct 256473 CGATTGATCTTCGCGGG 256457 Score = 104 bits (114), Expect = 6e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| ||||||||||| || || |||||||||||||| || || ||||| |||||| Sbjct 256915 CAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCAGAC 256856 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || || ||| ||| || || ||||| || || || || || |||||||| Sbjct 256855 ACAATTGAAAATGTTAAAGCAAAAATACAAGACAAGGAGGGTATTCCGCCAGACCAGCAG 256796 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 256795 CGCCTTATATTTGCAGG 256779 Score = 100 bits (110), Expect = 7e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| | || || || ||||||||| | || || || || ||| Sbjct 256247 CAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCTGAC 256188 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| || || || |||||||||||||||||||| |||||||| || ||||| Sbjct 256187 ACAATCGAAAATGTAAAGGCCAAGATTCAGGACAAAGAAGGGATCCCTCCAGATCAGCAG 256128 Query 178044 CGACTTATCTTCGCCGGAAAACA 178066 || ||||| || || || || || Sbjct 256127 CGCCTTATTTTTGCTGGTAAGCA 256105 >seq2629 Length=74368 Score = 98.7 bits (108), Expect = 2e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || |||||| | || || |||||||| || || ||||| ||| |||||| Sbjct 47962 CAAATTTTTGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCAGAT 48021 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || || |||||||||||||| || ||||| || ||||| Sbjct 48022 ACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCTCCAGATCAGCAG 48081 Query 178044 CG 178045 || Sbjct 48082 CG 48083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203579578394214