Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3622 82.4 6e-11 seq219 82.4 6e-11 >seq3622 Length=226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 |||||| ||||| |||||||| |||||||||||| || ||| ||||| | ||| Sbjct 203 CTGAAAACCATAAACAGGTCCCAGATCTCCTTCAGATCGATCACTGAAACCGCACTGATC 144 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTT 102179 | ||| | ||||||||| ||||||||||| || || | |||| | ||| Sbjct 143 AAGAAACTGCCGAGATCCATTGGCATCCCAAATCCTGACACCTTTCTCAGATAAATGCTT 84 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 ||| | ||| |||| || ||||| | ||||||||||||||| ||| |||| | | Sbjct 83 TGC-ATTTGTATCGCCTCGAATGAACCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGA 25 Query 102240 CTCTCTTAGTAGTTAAAAGTGGAA 102263 ||| || || || || | |||| Sbjct 24 CTCGTTTGGTTGTCAATACCGGAA 1 >seq219 Length=241172 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 |||||| ||||| |||||||| |||||||||||| || ||| ||||| | ||| Sbjct 18115 CTGAAAACCATAAACAGGTCCCAGATCTCCTTCAGATCGATCACTGAAACCGCACTGATC 18174 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTT 102179 | ||| | ||||||||| ||||||||||| || || | |||| | ||| Sbjct 18175 AAGAAACTGCCGAGATCCATTGGCATCCCAAATCCTGACACCTTTCTCAGATAAATGCTT 18234 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 ||| | ||| |||| || ||||| | ||||||||||||||| ||| |||| | | Sbjct 18235 TGC-ATTTGTATCGCCTCGAATGAACCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGA 18293 Query 102240 CTCTCTTAGTAGTTAAAAGTGGAA 102263 ||| || || || || | |||| Sbjct 18294 CTCGTTTGGTTGTCAATACCGGAA 18317 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 102061 CTGAAATCCATACACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATC 102120 |||||| ||||| |||||||| |||||||||||| || ||| ||||| | ||| Sbjct 20838 CTGAAAACCATAAACAGGTCCCAGATCTCCTTCAGATCGATCACTGAAACCGCACTGATC 20897 Query 102121 TAAAAATGATCTAGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCT-CTT 102179 | ||| | ||||||||| ||||||||||| || || | |||| | ||| Sbjct 20898 AAGAAACTGCCGAGATCCATTGGCATCCCAAATCCTGACACCTTTCTCAGATAAATGCTT 20957 Query 102180 TGCTGTCAGTAGATCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATA 102239 ||| | ||| |||| || ||||| | ||||||||||||||| ||| |||| | | Sbjct 20958 TGC-ATTTGTATCGCCTCGAATGAACCATAGCAGTTCTTCAACAACGCCTTTCCAGTAGA 21016 Query 102240 CTCTCTTAGTAGTTAAAAGTGGAA 102263 ||| || || || || | |||| Sbjct 21017 CTCGTTTGGTTGTCAATACCGGAA 21040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361181482469585