Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1733 109 8e-19 seq511 95.1 2e-14 seq1725 87.8 3e-12 >seq1733 Length=353299 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| ||||||| | || || ||||| ||||| | || | || || Sbjct 118728 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 118787 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||| || ||| | ||| || |||||||| || ||||| || ||||| ||||| Sbjct 118788 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 118847 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || || ||||| || || || | ||||| |||| ||||| |||||||| Sbjct 118848 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAA 118907 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGG 124765 |||||| || ||||| || |||| ||||| | || | || ||||| Sbjct 118908 TATTCAGAAGGAATCGACGCTGCACCTGGTTCTTCGCCTTCGTGGTGG 118955 Score = 86.0 bits (94), Expect = 9e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| |||| ||| | || ||||| || || || |||| |||| || | Sbjct 118085 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 118144 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| |||| || ||||| ||||||||||| || || || ||||| Sbjct 118145 GACACAATCGAAAATGTAAAGGCCAAGATTCAGGATAAAGAAGGGATCCCTCCGGATCAG 118204 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTA 124688 || | ||||||||||| || || || ||| Sbjct 118205 CAGCGCCTTATTTTTGCTGGTAAGCATTTA 118234 >seq511 Length=156398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | ||||| |||| || || || || || | ||| | ||| | Sbjct 68862 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 68803 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| |||||||||||||| || ||||| |||||||||||| Sbjct 68802 GATACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 68743 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 ||| | |||||||||||||| Sbjct 68742 CAACGACTTATTTTTGCAGG 68723 >seq1725 Length=206553 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || |||||||| || | || || |||| || ||||| || || | ||| | ||| | Sbjct 95921 ACCATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCC 95862 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||||||||| ||| ||||| |||||| || || |||||||| ||||| || ||| Sbjct 95861 TCGGATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGAT 95802 Query 124656 CAACAAAGGCTTATTTTTGCAGG 124678 || ||| || | ||||||||||| Sbjct 95801 CAGCAACGGTTGATTTTTGCAGG 95779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755306466928000