Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq1733 147 5e-30 seq511 116 9e-21 seq1725 104 5e-17 >seq1733 Length=353299 Score = 147 bits (162), Expect = 5e-30 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| |||||||||||||| ||||| | || | |||||| Sbjct 118941 AAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGTGCGACCGTC 118882 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || ||||| || || | ||| ||||| || || || ||||| || || Sbjct 118881 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 118822 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||||||||| |||||||| | ||||| || || || || ||||| || || Sbjct 118821 TTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGT 118762 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || | || |||||||| ||||||||| Sbjct 118761 TTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 120 bits (132), Expect = 7e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| || | ||| ||||| ||||| || |||||||||||||||||| Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || || ||||||||||| | || || || || || |||| || || ||||| || Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 104534 GTAAGTGTTTTTACAAATATCTGCAT 104559 || | |||||||||||| || ||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 >seq511 Length=156398 Score = 116 bits (128), Expect = 9e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| || | ||||||||||| || || || || ||||| ||||| || || Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| || | ||||||| | ||||||||| || ||||| ||||| ||||| | Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 104540 GTTTTTACAAATATCTGCATTTTG 104563 || || || ||||||||||| ||| Sbjct 68843 GTCTTCACGAATATCTGCATCTTG 68866 >seq1725 Length=206553 Score = 104 bits (114), Expect = 5e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 || |||||||| | || || ||||| || ||||| |||||||| ||||| || || ||| Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 104480 TTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAG 104538 |||||||| || | ||||| | ||| ||| ||||| || ||||| || |||||||| | Sbjct 95839 TTTACATTCTCAATTGTATC-CGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAA 95897 Query 104539 TGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| Sbjct 95898 AGTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151164797456180