Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4800 95.1 2e-15 seq1088 93.3 7e-15 >seq4800 Length=253 Score = 95.1 bits (104), Expect = 2e-15 Identities = 129/180 (72%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 || ||| | || |||||| | |||||||| | |||| || ||||| | || | || Sbjct 1 AAACGTATTTCGGGATTGATTTATGAAGAAACACGTGGCGTGTTGAAAGTGTTTTTGGAG 60 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||| ||| | ||| |||||||| ||||| ||||| || || | Sbjct 61 AATGTCATACGTGACGCTGTAACATATTGTGAGCACGCGAAACGAAAGACAGTTACAGCA 120 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | |||||||| |||||||| ||||| |||| | ||||||||||| ||||| Sbjct 121 ATGGATGTTGTCTATGCGTTGAAACGCCAAGGACGTACATTGTATGGTTTTGGTGGTTAA 180 >seq1088 Length=736399 Score = 93.3 bits (102), Expect = 7e-15 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| ||||| | ||| || |||||||| ||||| || || ||||||||||| Sbjct 159415 CGCTAAGCGCCATCGAAAGGTTCTACGTGATAACATTCAAGGTATAACGAAGCCAGCTAT 159356 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 |||||| |||| ||||||||||| || || || | || || | | |||||||| | Sbjct 159355 TCGTCGTTTGGCACGTCGTGGTGGCGTGAAACGAATTTCAGGTCTCATTTATGAAGAAAC 159296 Query 16552 TCGTGATGTTTTGAAG 16567 ||| || |||||| Sbjct 159295 GCGTAGCGTGTTGAAG 159280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79060721948655