Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1012 113 3e-20 seq1733 105 4e-18 seq396 104 2e-17 seq636 96.9 2e-15 >seq1012 Length=184763 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| Sbjct 37050 CTCTCTCTTCAAAGTTCTTTGCAACTTTCCCTCACGGTACTTGTTTGCTATCGGTCTCAT 36991 Query 20007 GGTAATATTTAGCCTTA 20023 ||| |||||||||||| Sbjct 36990 GGTCGTATTTAGCCTTA 36974 >seq1733 Length=353299 Score = 105 bits (116), Expect = 4e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| |||||||| ||||||||||| || |||| || | || || || ||||| Sbjct 118919 TCCTTCTGAATATTATAATCAGACAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAG 118860 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || || || || ||||| | || | |||||| ||||| ||| ||| || ||||| Sbjct 118859 ATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTT 118800 Query 38247 TGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACG 38306 | || |||||| | || ||||| | ||| || |||||||||||||| || || || Sbjct 118799 TCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACA 118740 Query 38307 AATATCTGCAT 38317 || |||||||| Sbjct 118739 AAAATCTGCAT 118729 Score = 84.2 bits (92), Expect = 1e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCAT 38227 ||| || || || ||||| || ||||| || ||||| | |||| |||||||| ||| Sbjct 118234 TAAATGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTG 118175 Query 38228 AATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTT 38287 ||| || ||| ||||| | || || || | ||||||||||| || || || || Sbjct 118174 AATCTTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTT 118115 Query 38288 ACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||||||| ||||| || || || |||||| Sbjct 118114 GCCCGTCAATGTTTTTACAAAAATTTGCATG 118084 >seq396 Length=228062 Score = 104 bits (114), Expect = 2e-17 Identities = 77/89 (87%), Gaps = 6/89 (7%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||| |||||||||||| |||||||||||||||| || |||||||| Sbjct 23646 AAGCCC-TTCCCTTAGCTGTGGTTTCGTTAGATAGTAGATAGGGATAGTGGAAATCTCGT 23588 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGA 25985 |||||| |||||| ||||||| ||||||| Sbjct 23587 TAATCCATTCATGTGCGTCACGAATTAGA 23559 >seq636 Length=168298 Score = 96.9 bits (106), Expect = 2e-15 Identities = 71/83 (86%), Gaps = 5/83 (6%) Strand=Plus/Plus Query 25914 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCAT 25968 |||||||||||||||||||||| ||||||||| || |||||||||||||| ||| | Sbjct 4001 TTGGCTGTGGTTTCGCTAGATAATAGATAGGGACAGTGGAAATCTCGTTAATCCATTCCT 4060 Query 25969 GCGCGTCACTAATTAGATGACGA 25991 || |||||| ||||| ||||||| Sbjct 4061 GCACGTCACGAATTAAATGACGA 4083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334882558853885