Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq1733 159 3e-34 >seq1733 Length=353299 Score = 159 bits (176), Expect = 3e-34 Identities = 165/214 (77%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| |||||| || ||||||||||||||||| |||||| |||| ||| |||||||||| Sbjct 118722 CGGAGGAATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGA 118781 Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 | | ||||| |||||||| |||| ||||||| | ||| ||||| ||||| |||| Sbjct 118782 GGCTTCTGATACTATCGAAAATGTCA---AAGCAAAGATTCA-AGACAAGGAAGGCATTC 118837 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||| || || ||||| | || ||||| ||||| || | || || | |||||| || Sbjct 118838 CACCAGATCAGCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGT 118897 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACA 25201 ||||| |||||||| || ||||| ||||| || Sbjct 118898 CTGATTATAATATTCAGAAGGAATCGACGCTGCA 118931 Score = 89.7 bits (98), Expect = 4e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| |||||||| || ||||| || || | ||||| | ||||| ||| | ||| Sbjct 118085 ATGCAAATTTTTGTAAAAACATTGACGGGCAAGACGATCACCTTAGAAGTTGAGGCTTCT 118144 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | || | ||| || ||||||||||| || || || || Sbjct 118145 GACACAATCGAAAATGTAAAGGCCAAGATTCAG-GATAAAGAAGGGATCCCTCCGGATCA 118203 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTA 25148 ||||| |||||||||| || || || ||| Sbjct 118204 GCAGCGCCTTATTTTTGCTGGTAAGCATTTA 118234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433244372435525