Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq1733 134 1e-26 seq511 114 1e-20 seq1725 95.1 1e-14 >seq1733 Length=353299 Score = 134 bits (148), Expect = 1e-26 Identities = 148/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||||| || |||||||| | || || |||||||| | | Sbjct 118729 ATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTCT 118788 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || ||||| ||| |||||||||||||| || |||||||| ||||| Sbjct 118789 GATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCAG 118848 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || ||||| ||||| ||| | ||||| ||||| | || ||||| || Sbjct 118849 CAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAAT 118908 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 118909 ATTCAGAAGGAATCGAC 118925 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||||||| |||||||| || || ||||| | || || |||||| ||||||||||||||| Sbjct 117399 TTGTAAACATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGG 117458 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 | | | || || | || || | ||| |||||| |||||||| ||||||||||| | Sbjct 117459 AGGCTTCAGACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAAGAGGGTATTCCGC 117518 Query 22331 CCGATCAACAACGTCTTATATTTGCCGG 22358 | || || || || ||||||||||| || Sbjct 117519 CAGACCAGCAGCGCCTTATATTTGCAGG 117546 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| |||||||||||| | ||||||||||| |||| | ||||||||| | | Sbjct 117739 ATGCAAATCTTTGTTAAAACTCTTACCGGTAAAACAATCACATTGGAAGTGGAAGCATCT 117798 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || |||||| || ||||||||||| |||||||| || || Sbjct 117799 GACACCATCGAGAATGTTAAGGCAAAAATCCAGGACAAGGAGGGAATTCCACCAGACCAG 117858 Query 22339 CAACG 22343 || || Sbjct 117859 CAGCG 117863 >seq511 Length=156398 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 || |||||||| || || || || || ||||| || || ||| | || ||||| || ||| Sbjct 68868 GTCAAGATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAA 68809 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | |||||||| | || || | || ||||||||||| ||||||||||||||||| Sbjct 68808 TCGTCCGATACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCT 68749 Query 22333 GATCAACAACGTCTTATATTTGCCGG 22358 ||||||||||| ||||| ||||| || Sbjct 68748 GATCAACAACGACTTATTTTTGCAGG 68723 >seq1725 Length=206553 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||||||||| ||||||||| | || ||||| || ||| || | Sbjct 95918 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 95859 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| ||||| || ||||| || || || || || ||||| Sbjct 95858 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 95799 Query 22339 CAACGTCTTATATTTGCCGG 22358 ||||| | || ||||| || Sbjct 95798 CAACGGTTGATTTTTGCAGG 95779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419646997086775