Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1733 156 8e-33 seq511 109 1e-18 seq1046 86.0 1e-11 seq909 86.0 1e-11 seq112 86.0 1e-11 >seq1733 Length=353299 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 ||| || |||||||| | |||| ||| ||||| || || || || || |||||||| || Sbjct 118956 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGA 118897 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 | ||| | || || || | |||||| || || || || |||| || || || ||||| Sbjct 118896 CAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 118837 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||||||||||||||||||||||||||| ||||| ||||| || || | | || || Sbjct 118836 AATGCCTTCCTTGTCTTGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCAC 118777 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 ||| | || |||||||| ||||| | ||||| || || ||||||||| Sbjct 118776 TTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || ||||| || | || || ||||| |||||||| || |||||||| || || |||||| Sbjct 117878 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 117819 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || |||||||||||| | || ||| |||||||| ||||| ||||| || || || Sbjct 117818 TTAACATTCTCGATGGTGTCAGATGCTTCCACTTCCAATGTGATTGTTTTACCGGTAAGA 117759 Query 68442 GTCTTGACGAATATCTGCAT 68461 || || || || || ||||| Sbjct 117758 GTTTTAACAAAGATTTGCAT 117739 >seq511 Length=156398 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381 || || || || |||| |||||| || |||||||| || ||||| |||||||| || ||| Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441 || || ||| ||||| || | |||||||| || | ||| || || ||||| || | Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 68442 GTCTTGACGAATATCTGCAT 68461 ||||| |||||||||||||| Sbjct 68843 GTCTTCACGAATATCTGCAT 68862 >seq1046 Length=58246 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 52992 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 52933 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 52932 CCCGCATCGGGC 52921 >seq909 Length=38190 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 29701 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 29760 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 29761 CCCGCATCGGGC 29772 >seq112 Length=325603 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||||||||||||||||| ||||| | || ||||||| || | |||| |||||||||| Sbjct 32312 GCCCGGTTAGCTCAGTCGGTAGAGCACCAGACTCTTAATCTGGCTGTCGCGGGTTCGAGC 32253 Query 84516 CCCACATCGGGC 84527 ||| |||||||| Sbjct 32252 CCCGCATCGGGC 32241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921439976366200