Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq511 95.1 3e-14 seq1725 87.8 4e-12 >seq511 Length=156398 Score = 95.1 bits (104), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 ||||| || || || || |||||| | ||| || || || ||||| || ||||| || Sbjct 68723 CCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGCC 68782 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | |||| ||||||||| || || || |||||||| || || | Sbjct 68783 TTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAAC 68842 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||| |||||||||||||| Sbjct 68843 GTCTTCACGAATATCTGCAT 68862 >seq1725 Length=206553 Score = 87.8 bits (96), Expect = 4e-12 Identities = 106/143 (74%), Gaps = 6/143 (4%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||| || || ||| |||||| || |||||||| ||||| |||||| Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGA---TCTGGGGGTATGCCTTCTTTGTCCTGTATTTTC 95835 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||| || || || || | ||| ||||| || || ||||| ||||| || || || Sbjct 95836 GCTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTT 95895 Query 288451 AGAGTCTTGACGAATATCTGCAT 288473 | ||| |||||||| || ||||| Sbjct 95896 AAAGTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179415064711130