Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq1733 141 9e-29 seq1725 82.4 8e-11 >seq1733 Length=353299 Score = 141 bits (156), Expect = 9e-29 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || || || | ||||||||| || ||||| || ||||| | | ||||| |||| Sbjct 118941 AAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGTGCGACCGTC 118882 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| ||| | || || |||||||| || || ||||| ||||| || || Sbjct 118881 CTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTC 118822 Query 64351 TTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGG 64409 ||| | | |||||||| ||| || | |||||| || |||||||| | |||| || Sbjct 118821 TTG-AATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGG 118763 Query 64410 TCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || || |||||||| ||||| ||||| |||||| Sbjct 118762 TTTTACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 64298 TGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATT 64357 ||||| || ||| |||| || |||||||| || ||||| || |||||||| || || || Sbjct 118230 TGCTTACCAGCAAAAATAAGGCGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATC 118171 Query 64358 TTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCG 64417 || ||||||| || | ||| ||| || || ||||||| || | |||||||| Sbjct 118170 TTGGCCTTTACATTTTCGATTGTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCC 118111 Query 64418 GTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| |||||||| ||||||||||| Sbjct 118110 GTCAATGTTTTTACAAAAATTTGCAT 118085 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| | || || ||||||||||| || ||||| || ||||| |||||||| |||||| Sbjct 117546 CCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTAT-TTTTGC 117488 Query 64364 TTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAA 64422 ||| ||| || | ||| || || |||||||| | ||| | || || || |||| Sbjct 117487 TTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCAG 117428 Query 64423 AGTTTTTACGAAAATTTGCATTTTAATAATGATA 64456 ||||| ||||| |||||||| || | || |||| Sbjct 117427 TGTTTTCACGAAGATTTGCATGTTTACAAGGATA 117394 >seq1725 Length=206553 Score = 82.4 bits (90), Expect = 8e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| | ||| ||||| || || || || |||||||| || |||||||| Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | |||||| || || || || | || | || || || || ||| Sbjct 95839 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 95898 Query 64424 GTTTTTACGAAAATTTGCAT 64443 ||||| |||||||||||||| Sbjct 95899 GTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499545901557400