Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq1733 127 2e-24 >seq1733 Length=353299 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | |||| || | ||| || || || |||||||| ||||| Sbjct 118956 TCCACCACGAAGGCGAAGAACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGA 118897 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || |||||| || || ||||| || || || |||||| |||||||||||| || || Sbjct 118896 CAATGTGCGACCGTCCTCCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGG 118837 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTT-GAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 ||||| |||||||| ||| | | ||||| || | ||||| || || | | ||| | Sbjct 118836 AATGCCTTCCTTGTCT-TGAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCA 118778 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||||| || | ||||| || |||| ||| ||||||||||||||||| Sbjct 118777 CTTCGAGTGTTATGGTTTTACCCGTCAAAGTCTTTACAAAAATCTGCAT 118729 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 126974 CCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGC 127033 || ||| |||||||||||||||| || || || || |||||||||||| |||||| | Sbjct 117878 CCCGCGAAGATCAATCGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCCTGGATTTTTGCC 117819 Query 127034 TTGAGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAG 127092 || | | |||| |||||| | | || || ||||| | || | ||||| ||||| || Sbjct 117818 TTAACATTCTCGATGGTGTCAGATGCT-TCCACTTCCAATGTGATTGTTTTACCGGTAAG 117760 Query 127093 AGTTTTTACAAAAATCTGCAT 127113 |||||| ||||| || ||||| Sbjct 117759 AGTTTTAACAAAGATTTGCAT 117739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475406680560400