Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq1733 123 2e-23 seq1725 91.5 1e-13 >seq1733 Length=353299 Score = 123 bits (136), Expect = 2e-23 Identities = 155/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 45132 ACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA--TCGT 45189 || || |||||||| |||||||| || ||||||||||| ||| | | || || | Sbjct 118937 ACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCA--GACAATGTGCGACCGTCCT 118880 Query 45190 CCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTT 45249 ||| || || || || | |||| ||| ||||| || || ||||||||||| || |||| Sbjct 118879 CCAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTT 118820 Query 45250 GAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 |||| ||| ||||| ||| | || || |||| ||| |||||||| || | |||| Sbjct 118819 GAATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTT 118760 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || | ||| ||||||||||| ||||| Sbjct 118759 TACCCGTCAAAGTCTTTACAAAAATCTGCAT 118729 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACG 45275 || ||||| ||||| || || ||||||||||| ||||| || || | ||| | Sbjct 118209 CGCTGCTGATCCGGAGGGATCCCTTCTTTATCCTGAATCTTGGCCTTTACATTTTCGATT 118150 Query 45276 GTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATT 45335 ||||| |||| ||| ||||| | || | ||| ||||| || | ||||||||||||||| Sbjct 118149 GTGTCAGAAGCCTCAACTTCTAAGGTGATCGTCTTGCCCGTCAATGTTTTTACAAAAATT 118090 Query 45336 TGCAT 45340 ||||| Sbjct 118089 TGCAT 118085 >seq1725 Length=206553 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 ||||| | ||||| |||||||| || || || ||||||||||| || || ||||| | Sbjct 95779 CCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCGCT 95838 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 || | || | || || || || ||||| || || |||| |||||| || |||| | Sbjct 95839 TTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTAAA 95898 Query 45321 GTTTTTACAAAAATTTGCAT 45340 ||||| || ||||||||||| Sbjct 95899 GTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451913731616600