Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq495 154 6e-32 seq8952 152 2e-31 seq1733 104 9e-17 seq1076 100 1e-15 seq511 100 1e-15 seq1725 95.1 5e-14 seq318 91.5 6e-13 >seq495 Length=1247913 Score = 154 bits (170), Expect = 6e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 451217 TATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAA 451276 || || || || || || |||||| |||| ||||| ||||| || |||||| | |||| Sbjct 1246372 TACAAGGGCGAGACGAAGACTTTTACTCCAGAAGAGATTTCGTCGATGGTTTTGGTTAAA 1246313 Query 451277 ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTT 451336 ||||| || || || ||| | | | ||| | || | ||||| || ||||| || Sbjct 1246312 ATGAAGGAGACGGCGGAAGCTTTTCTGGGTCACGCGGTCAAGGATGCTGTTATTACAGTC 1246253 Query 451337 CCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGT 451396 ||||| || || ||||| ||||||| ||||| ||||||||| | || ||||||||| Sbjct 1246252 CCCGCATACTTTAATGACTCACAACGACAAGCCACTAAAGATTCCGGTGCAATTGCTGGT 1246193 Query 451397 TTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 |||||||||| || ||||| || ||||| |||||||||||| | || ||||| Sbjct 1246192 CTAAATGTTCTACGTATTATCAACGAACCAACAGCAGCTGCTATTGCTTATGG 1246140 >seq8952 Length=394 Score = 152 bits (168), Expect = 2e-31 Identities = 165/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 451232 AAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCA 451291 ||||| || || || || || |||||| | ||||||||| |||||||| || | ||| Sbjct 289 AAAACCTTCGCACCGGAGGAGATTTCAGCAATGGTTCTTGGCAAAATGAAGGAGATCGCA 230 Query 451292 GAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAAT 451351 ||| |||| | || ||| | ||||||| |||| || || ||||| || ||| Sbjct 229 GAAGCATATCTAGGAAAGGAAGTAAAACATGCAGTTGTTACGGTACCTGCTTACTTTAAT 170 Query 451352 GATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGA 451411 ||||||||||| ||||| || ||||||||||| |||||| || | |||||| |||| Sbjct 169 GATGCACAACGTCAAGCTACCAAAGATGCAGGTACTATTGCCGGCCTTAATGTTGTTCGT 110 Query 451412 ATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 || || |||||||||||||| || ||| | ||||||||| Sbjct 109 ATCATCAATGAACCTACAGCTGCCGCTATTGCATATGGA 71 >seq1733 Length=353299 Score = 104 bits (114), Expect = 9e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| || || || |||| |||||||| || || || || || || | || Sbjct 118728 AATGCAGATTTTTGTAAAGACTTTGACGGGTAAAACCATAACACTCGAAGTGGAGGCTTC 118787 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 ||||| || ||| | | ||| ||| |||||||| |||||||| ||||| || ||||| Sbjct 118788 TGATACTATCGAAAATGTCAAAGCAAAGATTCAAGACAAGGAAGGCATTCCACCAGATCA 118847 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 || || | || || | || || || || || || || | || ||| | |||||||| Sbjct 118848 GCAGCGACTGATCTTTGCGGGCAAGCAGCTGGAGGACGGTCGCACATTGTCTGATTATAA 118907 Query 391229 TATTGATAAGGATGCAACACTTCAC 391253 |||| | ||||| | || || ||| Sbjct 118908 TATTCAGAAGGAATCGACGCTGCAC 118932 Score = 86.0 bits (94), Expect = 2e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| |||||||||||||| ||||| || |||||||| || || | || Sbjct 117407 ATGCAAATCTTCGTGAAAACACTGACTGGAAAAACGATCACTCTTGAAGTGGAGGCTTCA 117466 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | ||||| |||||| ||||| || || || ||||| || || || Sbjct 117467 GACACAATTGAAAATGTTAAAGCAAAAATACAAGACAAAGAGGGTATTCCGCCAGACCAG 117526 Query 391170 CAACG 391174 || || Sbjct 117527 CAGCG 117531 >seq1076 Length=63818 Score = 100 bits (110), Expect = 1e-15 Identities = 166/238 (70%), Gaps = 10/238 (4%) Strand=Plus/Minus Query 451991 AATCCTGATGAAGCTGTTGCATATGGTGCTGCAGTTCAAGCAGCTATTCTAACAGGTTCA 452050 ||||| ||||||||||| ||||||||||| |||||||| || | | || | ||| Sbjct 32443 AATCCAGATGAAGCTGTGGCATATGGTGCAGCAGTTCAGGCTGGTGTTAT------TTCG 32390 Query 452051 GATGATGAAAAATTAGGAGATATTCTGTTAGTAGATGTAACACCTCTATCTCTTGGAGTT 452110 | ||| |||| || || ||| | || | ||||| | ||| || | ||||| || Sbjct 32389 GGTGAAGAAAGTACTGGTGACATTGTATTGTTGGATGTGAATCCTTTAACCCTTGGTATT 32330 Query 452111 GAAACAGCTGGTGGAATGATGACTAATTTAATTAAACGAGGA--ACTTCTATTCCTTGTA 452168 |||||| |||||| | ||||| || | ||| || |||| ||| ||||||| | Sbjct 32329 GAAACAATTGGTGGTGTTATGACCAAACTCATTCAA--AGGAACACTGTTATTCCTACCA 32272 Query 452169 AAAAGAGTCAAACATTTAGTACAGCAAGTGATAACCAACCAGGTGTAACTATTCAAGT 452226 | || ||||| | || ||||||| ||||||||| ||| || |||||||| || Sbjct 32271 AGAAAAGTCAGATCTTCTCTACAGCAGCTGATAACCAGCCAACAGTCACTATTCAGGT 32214 Score = 91.5 bits (100), Expect = 6e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 452315 CCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGTT 452374 || |||||||| |||| | ||| |||||| ||||| ||||| |||| | |||| Sbjct 31963 CCACAAATTGAGGTTACGTTTGAAATTGATGTGAATGGCATTCTACATGTCACAGCAGAG 31904 Query 452375 GAAAAATCATCTGGAAAATCAGAAAAAATTACAATTACTAATGATAAAAACCGTTTATCT 452434 || || ||||||| | | |||||||| || || |||||| | || || || || Sbjct 31903 GATAAGGGTACTGGAAACAAAAATAAAATTACGATCACAAATGATCATAATCGATTGTCA 31844 Query 452435 AAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGA 452487 |||||||||||||| ||| || |||| ||||| |||||| ||||| || Sbjct 31843 CCAGAAGATATTGAAAGGATGATAAATGATGCAGAGAAATTCGCCGATGAAGA 31791 >seq511 Length=156398 Score = 100 bits (110), Expect = 1e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || | ||||| || || ||||| ||||| || ||||| || Sbjct 68862 ATGCAGATATTCGTGAAGACGTTAACTGGAAAGACGATTACCCTTGAGGTAGAATCGTCC 68803 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || ||||||||||||||||| || ||||| ||||||||| Sbjct 68802 GATACCATTGAGAATGTAAAGGCTAAAATTCAAGATAAGGAGGGTATTCCACCTGATCAA 68743 Query 391170 CAACGTTTAATTTTCTCAGG 391189 ||||| | ||||| |||| Sbjct 68742 CAACGACTTATTTTTGCAGG 68723 >seq1725 Length=206553 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 95918 ATGCAAATTTTCGTCAAAACTTTAACTGGTAAAACGATTACGCTTGAGGTCGAATCCTCG 95859 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| ||||| | | ||| ||||| || || || ||||| || || || ||||| Sbjct 95858 GATACAATTGAGAATGTAAAAGCGAAAATACAGGACAAAGAAGGCATACCCCCAGATCAG 95799 Query 391170 CAACGTTTAATTTTCTCAGG 391189 ||||| || ||||| |||| Sbjct 95798 CAACGGTTGATTTTTGCAGG 95779 >seq318 Length=60109 Score = 91.5 bits (100), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 509506 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 509565 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 32549 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 32492 Query 509566 GTCCCACATAAGGC 509579 |||||||| | ||| Sbjct 32491 GTCCCACAGAGGGC 32478 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 511655 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 511714 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 32549 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 32492 Query 511715 ATCCCACATAAGGC 511728 ||||||| | ||| Sbjct 32491 GTCCCACAGAGGGC 32478 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/74 (86%), Gaps = 2/74 (3%) Strand=Plus/Minus Query 510741 GCCTTATTAGCTCAGTTGGATTAGAGCAGCAGGCTTTTAACCTGATGGTCGTGGGTTCGA 510800 ||||| ||||||||||||| ||||||| ||| ||||||| |||| |||||||||||||| Sbjct 32549 GCCTTCTTAGCTCAGTTGG--TAGAGCATCAGACTTTTAATCTGAGGGTCGTGGGTTCGA 32492 Query 510801 ATCCCACATAAGGC 510814 ||||||| | ||| Sbjct 32491 GTCCCACAGAGGGC 32478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975317554520180