Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq495 147 3e-30 seq316 91.5 2e-13 >seq495 Length=1247913 Score = 147 bits (162), Expect = 3e-30 Identities = 219/311 (70%), Gaps = 0/311 (0%) Strand=Plus/Plus Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 ||||| || | ||| || || ||||| || || |||||||| || |||||||| ||| Sbjct 1246128 TTCTTGTCCAAACCATAAGCAATAGCAGCTGCTGTTGGTTCGTTGATAATACGTAGAACA 1246187 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || |||||||| | | | |||||| || ||||||||||| || || |||||||| Sbjct 1246188 TTTAGACCAGCAATTGCACCGGAATCTTTAGTGGCTTGTCGTTGTGAGTCATTAAAGTAT 1246247 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || ||||| || | || || ||| |||| | ||| ||| | | |||||| | || Sbjct 1246248 GCGGGGACTGTAATAACAGCATCCTTGACCGCGTGACCCAGAAAAGCTTCCGCCGTCTCC 1246307 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 |||||||| | ||||||||| ||||||||||| | | ||| ||||| || || Sbjct 1246308 TTCATTTTAACCAAAACCATCGACGAAATCTCTTCTGGAGTAAAAGTCTTCGTCTCGCCC 1246367 Query 7835 TTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTATACGACCAA 7894 || | ||||| | | | |||||| | || || | | |||||| | | |||| Sbjct 1246368 TTGTATTCAACCTGCACTTTAGGTTTACCACCACCAGCATTCACTACCTTAAATGGCCAA 1246427 Query 7895 TCTTTCATATC 7905 | ||||||||| Sbjct 1246428 TGTTTCATATC 1246438 Score = 125 bits (138), Expect = 9e-24 Identities = 182/257 (71%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 7058 TCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGT 7117 || || || || || |||||||||||||||| || ||| ||||||||| | | Sbjct 1245299 TCGTCTGGATTGATGCTTTTATTCAGTTCTTTGCCAGAAAAGAAATCCGATAGGAGCTTC 1245358 Query 7118 TGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTCGATTTA 7177 || | |||||| || || || |||||||| || | || || |||| |||| | || Sbjct 1245359 TGCACTTTCGGAATACGGGTTGATCCACCTACTAGTACAATGTCATGGACTTGGGCCTTG 1245418 Query 7178 TCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCC 7237 || ||||| | || || |||| ||| || || || |||||| | |||||| | || Sbjct 1245419 TCCATCTTAGCATCACGGAGTGCTTTCTCAACCGGATCCATAGTTGAACGGAAAAGATCA 1245478 Query 7238 ATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTAT 7297 ||| | ||||||||| || |||||||| || || |||||||||| || ||| | Sbjct 1245479 GCACATAATTCCTCAAAGCGAGCACGGGTGATATTGGTGTAGAAATCAATTCCCTCGAAC 1245538 Query 7298 AACGAATCAATTTCAAT 7314 || ||||||||||| || Sbjct 1245539 AATGAATCAATTTCGAT 1245555 Score = 98.7 bits (108), Expect = 1e-15 Identities = 186/274 (68%), Gaps = 0/274 (0%) Strand=Plus/Plus Query 6568 TTCATCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGA 6627 |||||| || | || || ||||| || || || |||||| || || || || || || Sbjct 1244514 TTCATCATCCGCCTTGTATTTTTCGGCTTCCTGTACCATCCGCTCGATCTCATCCTTTGA 1244573 Query 6628 TAATCTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTC 6687 || | || |||||||| ||||| ||||| || | ||| || | || ||||| | Sbjct 1244574 CAAACGTCCTTTATCATTGGTAATGGTAATTTTGTTTTGTTTGCCTGTGGATTTATCCTG 1244633 Query 6688 AGCACTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGT 6747 ||| ||||||| |||||| || || |||| ||| ||| | || | |||||| || Sbjct 1244634 GGCAGAAACATTCAGAATACCGTTGGCGTCAATATCAAACGTGACTTCAATTTGCGGCAC 1244693 Query 6748 ACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGT 6807 ||| | || || | ||||| || | || || ||| ||||||| || | || || | Sbjct 1244694 ACCGCGAGGAGCAGGCGGAATTCCAGACAACTCGAATTTACCAAGCAAGTTATTGTCTTT 1244753 Query 6808 CGCCTTCTTACGTTCACCTTCATAGACTTTAATT 6841 | | |||||||||||| || || | |||| Sbjct 1244754 AGTCAAAGCACGTTCACCTTCGTAAACCTGAATT 1244787 >seq316 Length=264756 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 184231 TTTACCCCTAAGCGGAAAAACACCGTAATGATCACGACCAACAACTGAAAGACCAGCAAT 184290 |||||| | ||| || || |||||||| | |||||| |||||||| ||||| | || Sbjct 60480 TTTACCACGAAGAGGGAACACACCGTACTTATCACGTCCAACAACACCGAGACCTGAAAC 60421 Query 184291 TGCAAGTGTTTTTGCAGAATCACCTTCGGTAATAATAAGAGTACACTTACCAGAGTGTGT 184350 || | | ||| || ||||||||||| |||| |||||| ||||| | | || | | | Sbjct 60420 AGCCAACGATTTGGCTGAATCACCTTCCGTAAGAATAAGCGTACATTGTGCCGAATTTTT 60361 Query 184351 GGTACCGGCTTTATTGGCATCGTCGAGTTTTGGAATACCC 184390 ||||| || | || || || || |||||||| | |||| Sbjct 60360 CGTACCAGCATCGTTAGCGTCTTCCAGTTTTGGCACACCC 60321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635007083401400