Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Brugia_20pahangi_20[genbank_20GCA_5F001280985.1_202015-09-10] 15,835 sequences; 83,528,896 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq1733 138 3e-27 seq511 120 7e-22 seq1725 107 4e-18 >seq1733 Length=353299 Score = 138 bits (152), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| ||||| || || || || || |||||||| ||||| | | || | || || || Sbjct 118938 AACCAGGTGCAGCGTCGATTCCTTCTGAATATTATAATCAGACAATGTGCGACCGTCCTC 118879 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 |||||||| || || ||||| ||||| || || ||||| ||||||||||| |||||||| Sbjct 118878 CAGCTGCTTGCCCGCAAAGATCAGTCGCTGCTGATCTGGTGGAATGCCTTCCTTGTCTTG 118819 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||| ||| ||||| || || || || || ||| |||||||| || || | || || Sbjct 118818 AATCTTTGCTTTGACATTTTCGATAGTATCAGAAGCCTCCACTTCGAGTGTTATGGTTTT 118759 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || |||||||| ||||| || | |||||| Sbjct 118758 ACCCGTCAAAGTCTTTACAAAAATCTGCATT 118728 Score = 122 bits (134), Expect = 2e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || ||||| || || |||||||| ||||| || ||||||||||| |||||| Sbjct 117548 TACCTGCAAATATAAGGCGCTGCTGGTCTGGCGGAATACCCTCTTTGTCTTGTATTTTTG 117489 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || || ||||| ||||| ||| ||||||||||| || | ||| ||||| |||| Sbjct 117488 CTTTAACATTTTCAATTGTGTCTGAAGCCTCCACTTCAAGAGTGATCGTTTTTCCAGTCA 117429 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| | |||||| Sbjct 117428 GTGTTTTCACGAAGATTTGCAT 117407 >seq511 Length=156398 Score = 120 bits (132), Expect = 7e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 |||||| || |||||||||||||| || || ||||| || || || ||||||||||| Sbjct 68722 ACCTGCAAAAATAAGTCGTTGTTGATCAGGTGGAATACCCTCCTTATCTTGAATTTTAGC 68781 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAA 195119 ||| || ||||||||||| || || ||| || |||||||||| ||||||||| || || Sbjct 68782 CTTTACATTCTCAATGGTATCGGACGATTCTACCTCAAGGGTAATCGTCTTTCCAGTTAA 68841 Query 195120 AGTTTTTACGAACACTTGCAT 195140 || || ||||| | ||||| Sbjct 68842 CGTCTTCACGAATATCTGCAT 68862 >seq1725 Length=206553 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 ||||||| || || | ||||| || ||||| || |||||||||||||| || ||||| Sbjct 95777 TACCTGCAAAAATCAACCGTTGCTGATCTGGGGGTATGCCTTCTTTGTCCTGTATTTTCG 95836 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || || |||||||| || ||||| ||| || ||||| |||| ||| || || || | Sbjct 95837 CTTTTACATTCTCAATTGTATCCGAGGATTCGACCTCAAGCGTAATCGTTTTACCAGTTA 95896 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||||||| ||||| | |||||| Sbjct 95897 AAGTTTTGACGAAAATTTGCAT 95918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109256501785445